GgaEX6024315 @ galGal4
Exon Skipping
Gene
ENSGALG00000004568 | CELA2A
Description
chymotrypsin-like elastase family member 2A precursor [Source:RefSeq peptide;Acc:NP_001027562]
Coordinates
chr21:5545429-5546623:+
Coord C1 exon
chr21:5545429-5545565
Coord A exon
chr21:5546203-5546348
Coord C2 exon
chr21:5546471-5546623
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCATTTCCGTTACTTCCCAGCAA
3' ss Score
5.98
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GTATGACATTGCTTTGATCAAACTCACCGAACACGTTGAACTGAGTGACAAAATCAAGCTGGCCTGCCTCCCTCCTGCAGAAAGCATCCTGTCATCCAACACTGCCTGCTACGTGACGGGATGGGGAAGACTGCAGA
Seq A exon
CAAATGGAGCTCTCCCAGATGAACTGCAGCAAGGCCTGTTGCTGGTAGTAGATTATGCAACTTGTTCCAAGACCAACTGGTGGGGAAGCACGGTGAAAACCAACATGGTGTGCGCTGGTGGAGATGGAATCACCTCCAGTTGTAAC
Seq C2 exon
GGGGACTCTGGTGGTCCACTGAACTGTCAAAATGCAGATGGCGCATGGGAAGTGCATGGTATTGTCAGCTTTGGCTCTTCTCTTGGCTGCAACTATTATCAGAAGCCTTCTGTCTTCACCCGGGTCTCTGCTTTCGACAGCTGGATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(20.5=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCGAACACGTTGAACTGA
R:
CAGCTGTCGAAAGCAGAGACC
Band lengths:
257-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]