DreEX6010889 @ danRer10
Exon Skipping
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25511443-25516669:-
Coord C1 exon
chr5:25516572-25516669
Coord A exon
chr5:25513802-25513834
Coord C2 exon
chr5:25511443-25511543
Length
33 bp
Sequences
Splice sites
3' ss Seq
CGCCACCTGCTCCAGGTTTGACT
3' ss Score
-9.47
5' ss Seq
TGGTCTGCG
5' ss Score
-31.15
Exon sequences
Seq C1 exon
GTCTCTCTGCAGTATCAGAGTGGAAGCTCATTTTACCACACCTGCGGAGGATCTATCATTGCTGAAAACTGGGTGATGACTGCTGCTCACTGCATCAG
Seq A exon
ACTGGTGGGGCTCCAGTGTCAAGGAGACCATGG
Seq C2 exon
GTCATGATGAACAACTAAGAAGAAACGAGGATGTCGTTATATTAATACCAGAAAACCAACACACAGAGAAGAAAGTAAATAAAAGCATAATGACTCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276-'3-10,'3-6,7-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
PF0008921=Trypsin=FE(4.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGCGGAGGATCTATCA
R:
TCTGTGTGTTGGTTTTCTGGT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]