BtaEX6069746 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024496 | ELA2A
Description
Bos taurus chymotrypsin-like elastase family, member 2A (CELA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174714]
Coordinates
chr16:53275942-53279012:-
Coord C1 exon
chr16:53278876-53279012
Coord A exon
chr16:53277250-53277395
Coord C2 exon
chr16:53275942-53276094
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTGTCTCATGCAGGCA
3' ss Score
10.55
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GAATGACATTGCCCTGCTCAAACTGGCCAGCTCTGTCCCCCTGACTGACAAGATCCAGCTGGGCTGCCTGCCGCCTGCCGGCACCATCCTGCCCAACAACTACGTCTGCTATGTCACGGGCTGGGGAAGACTGCAGA
Seq A exon
GCAATGGAGCTCTTCCTGACATCCTGCAGCAGGGCAAGCTGCTCGTTGTGGACTATGCCACATGCTCCCAACCTAGTTGGTGGGGCAGCACTGTGAAGACCAATATGATCTGTGCTGGGGGAGACGGCGTGACCTCCAGCTGCAAT
Seq C2 exon
GGGGACTCCGGCGGGCCACTGAACTGCCAGGCGGCTAACGGCCAGTGGCAGGTGCACGGCATAGTCAGCTTCGGGTCCTCCCTCGGCTGCAACTACTACCGCAAGCCCTCCGTCTTCACCCGGGTCTCCAACTACAATGACTGGATCAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024496-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(20.5=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCCCTGACTGACAAGA
R:
ATTGTAGTTGGAGACCCGGGT
Band lengths:
243-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]