RnoINT0033819 @ rn6
Intron Retention
Gene
ENSRNOG00000013628 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:RGD Symbol;Acc:2548]
Coordinates
chr5:160377585-160379002:-
Coord C1 exon
chr5:160378857-160379002
Coord A exon
chr5:160377738-160378856
Coord C2 exon
chr5:160377585-160377737
Length
1119 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCCCACTCTGGCTTCCTCAGGGG
3' ss Score
7.85
Exon sequences
Seq C1 exon
CCAATGGAGCCACTCCTGACGTCCTGCAGCAGGGCCGTCTGCTGGTTGTGGACTATGCCACCTGCTCCAGCGCTAGCTGGTGGGGAAGCTCCGTGAAGACCAACATGGTGTGCGCTGGTGGCGACGGTGTGACCTCCAGCTGCAAT
Seq A exon
GTGAGTATCCACAATCGGGTGTCTCAGTCTACAGCAAAACATGGCGTGGATGTGGCATAGGGGGAGTTGGGGTAGTGGGGTGTCCTAGGATTCATCTTCTCCCTCCTTCCTGGGCTGGAACCCTGTTAATTGTTCTGGAACATTCCAGAAACTGGCCTTCGTTCTCGTTGTCCCCAGAAAAATATTGTAAGTACCATTGCCCTGTAGCATTCTCTTTGCCTAACTGCTAGGAAATCTTTTTTTTTTTTAAGACTTATTTATATGAGTACACTGAAGGTGTCTTCAGACACACCAGGAGAGGGTATCTCATTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGGAGTCTTAACCACTGAGCCATCTCTCCAGCCCTGCTGGGAAGTCTTTAGTCTTTCTTGAATCTCATCCAGGTCTCCCATTACTGTCATCCCACAGTAAACGGCCCAAGATAGCCCCTTTGGTAGCTGCTACAGAAATCTACTTAAAGACAGTGTCAGGAACCGAAGGACTTGGTACAGGCAGATTCTGCAGAGGAAGACAAAGGGGGAAGGGAGCCCCCACACCTTCAGATGCAGTCAGTGTCTTGACTACTAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACACACACTCACTCACTCACTCCATGGTCTCCCTCGGGCCTCTGAACAGTTTTGCCTTCTCTTGTGAACCAGAAAAGCTTCCGCTGGACTGACTGACGCGCTCTCATGAGAGTGAAACAAGAAAAGGCATAGAAAGGGCATAGCTGCCAACTTGGGACACATACCTACCACCCCAGCACTAGGGAGGGTTGCACAGTTTAGCACAGCCTGCGCTAAATGGAAAGACCCTGATTTTTTTAATTAATAAATTAATTAATAAGTGGCGAGCGATGCCAACATGATAGTCCACGCCTGTAATGGCAGCATTTATGAGGCTGAAGCAGGAGAGGCACGTTGTGAGGCTCAGTATCCAAAAAGTGAATACCAGCTCCTGAGGACAGTGACCTCGTAGAACAATAGGGCCCACTGGGCACCCTCTTCCTCTCTTCACGCCCCACTCTGGCTTCCTCAG
Seq C2 exon
GGGGACTCCGGCGGACCACTGAATTGCCAGGCATCTAATGGCCAGTGGCAGGTGCACGGTATTGTGAGCTTTGGCTCCACTCTGGGCTGCAACTACCCCCGTAAGCCATCTGTCTTCACCAGGGTCTCCAACTACATCGACTGGATCAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013628:ENSRNOT00000018349:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.5=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCACTCCTGACGTCC
R:
CGAGTTGATCCAGTCGATGTAGT
Band lengths:
294-1413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]