BtaINT0055765 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85520346-85521915:-
Coord C1 exon
chr10:85521766-85521915
Coord A exon
chr10:85520559-85521765
Coord C2 exon
chr10:85520346-85520558
Length
1207 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
CCTGTTCTCGTCCCCCATAGACT
3' ss Score
10.94
Exon sequences
Seq C1 exon
ATCCAGACCAAGACCGTGGCCCAGTGCGTGGAGTTCTACTACACCTACAAGAAGCAGGTGAAGATCGGCCGCAATGGGACGCTAACCTTTGGGGATGTGGATACGAGTGATGAAAAGTCGGCCCAGGAAGAGGTTGAAGTGGATATTAAG
Seq A exon
GTGACTCCCTTCCCAGCTTCAGCTGCTTAGGCTGAGCTGGGAGCCTGAGCCCAAGCTCTCCAGGACTCCCTGGAGTGGGGAGAGAGAGGAAGGCAGTGCCCCTGACAGCCCAGGGAGTTGATGTTCTAGGCACTGGCCCTGGACCTTTGGGTTGCCCTTTCTACCTGCCAGTGTCGTTGTAATGATACACTGTGTTGATGCAGAACATTGGGGATATTTCCCACTGTTCATACCAGCATCAGTTTCTTGTCCTCTCTTAGCAGACCTCTGACACCGTTCCCTCAACTTTAATCATTCTTGTGTCACTTGTATGAATTCTGCTCTATCTGCATCCTACCACATGTCACCATTAATACTTTTGTCATGTCCACACACCATTTGTGCTAGTACTTATTTTTCTTTAAATCAACTCTAAAGGGAAGCTTTATATCACAACCATAAATAGAAAACCAGTGCTCTTTGTCACAGAAGGTACTGGTAAAAATATTTATATATATGAAAACCAAACAATGTTATGAAATTCTAGCCAGGTATTACCACCTGCCAAACCTCTGAGATGAGGCCTAACCTCTCCTTGTTAAGTCTAAAGAAGTATAAAAGACACATTAACGCCAATTTGAGGCTTTGTCCTTGACATAATCAGGGTTGAAAGAGAACTGAAAAGAGAATGTTATTCAATTCTGTAAAAAGAGAATGTTATTTAATCCTGTGTCCATGCATCCACCTAATATCATCTTGGGGTCATAAGTCCACACGTAGTGACATGCTGCTTTAAGACAGGGAGTGATTTAGTTCCCATTTTTGCAGATGGGAAGAGGGTAGAGAGACAGAAAACATTACAAAGATAGTTTAGAATGGAGCTCAAAGTGGCACCTGGCCCCACCAGGCCACCCTACCCCAAGAATCCCTCTTGGATATACCCAAGAAGACAGGTGGCCTGTGGGGTGGGACGGGCAGGTTCCCTCCATGCCCCAGCCCCACCTCAAGTGCTTGGTCTCATTCTGAGGGCTCCCAGGCCCTCAAGCCTCTCCTCTTACAGGCAGACTAGCTGTGGAAGGGTGTAAGGTCATAGCACAGGAGGCTGTGCTGGGCCAAGCAATGCAGGCAGGATTAGCCGGGGCTTGTGAGCCCCTCGCTGGATCAGACTTAGTGTATATGACTGTGTGACCGCACTGTGGGCTCACTCCCCTGTTCTCGTCCCCCATAG
Seq C2 exon
ACTTCCCAGAAGTTCCCAAGGGTGCCTCCTCCCAGAAGAGAGTCCCCAAATGAAGAGAGGCTAGAGCCCAAGAAGGAAGAAAAAGAGACCAGAAAGGAGGGGGAGGAGGAGATGCCAGAGACCCAGGACAAGGGGGAGCAGGAAGAGGGGCGAGAGCGAAGCCGGCGGGCAGCGGCTGTCAAAGCCACACAGACACTACAGGCCAATGAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272:ENSBTAT00000012216:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGACCAAGACCGTGGC
R:
TTGGCCTGTAGTGTCTGTGTG
Band lengths:
356-1563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development