GgaINT0060217 @ galGal4
Intron Retention
Gene
ENSGALG00000009282 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr5:25432017-25432523:+
Coord C1 exon
chr5:25432017-25432166
Coord A exon
chr5:25432167-25432349
Coord C2 exon
chr5:25432350-25432523
Length
183 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TCCTTTATCTTCTGGTGAAGAGT
3' ss Score
4.2
Exon sequences
Seq C1 exon
ATAAAAACCAAGACAGTGGCTCAGTGTGTGGAATTCTACTACACATATAAGAAACAAGTGAAAATTGGTCGGAATGGGACCTTAATTTTTGGAGACATAGATGTTGCTAATGAAAAGTCTGTGAGAGATGAAGCTGAAGTTGACATCAAG
Seq A exon
GTAATTTCCTAAATTTCTATGGTGCTAAGTTTGATTTTTGTGTGCTGACTTGTTTGGTAGTAGAATCGAGCAAAAACAATCCAGCCAGTGTGGAGTTCAGACTGACAAGCTTGTGTCCTGTGTCACGTAATGACTTTTACTTGCAGACACCAAAATTAACAGTTCCTTTATCTTCTGGTGAAG
Seq C2 exon
AGTTCCCATAGGTTTGCACGTGTGCTTCCTCTCAGAAGGGACTTTTTCAGTGAAGAACAGGGGCACTTGGAAGAGGAAGAAGAGGAGGCAGAAGAGGCAGAGGAAGGGTTGGATAACAGAAAGAAGAGCACACTCCTTTTCAAAGATGAACAGACACTACAAGATGATTTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282:ENSGALT00000015102:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.276
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGACAGTGGCTCAGTGTG
R:
ACCCTTCCTCTGCCTCTTCTG
Band lengths:
252-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]