RnoINT0054392 @ rn6
Intron Retention
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107639050-107640524:-
Coord C1 exon
chr6:107640375-107640524
Coord A exon
chr6:107639263-107640374
Coord C2 exon
chr6:107639050-107639262
Length
1112 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCTCATTCTTGTCCCCATAGACT
3' ss Score
9.31
Exon sequences
Seq C1 exon
ATCCAGACCAAGACTGTGGCTCAGTGCGTGGAGTTCTACTACACCTACAAGAAACAGGTGAAAATTGGCCGCAACGGGACACTCACCTTTGGTGACCTGGATACCGGTGCTGAGAAGTCCGGCCAAGAGGAAGTCGAGGTGGACGTTAAG
Seq A exon
GTGAGTCCTTCCTGGCTCTGCCGCCTCACTGTTGGTAACACCTGGGGCCAGACTCCTGGCATTTTATACAGGGCTGTCAGAGGAGAGCAGGTCCCTGAGAGCTCCGGGGAGCTGGTTGGTGGCCCAGGCCCTGAACCTTTTGAGCTCTCTGGCATTGACTGTCCAGGTCACAGTGATGGTGCTGATGTAGAACACTGGAGAGTCTGAGGCACAGCTTCATCTTACTGCCTCCTCCGAGCAGACCACTCAGGCCACATCCGGGCTCCCGCTCTCCTTGTACCACCTTTATGATTTCTGCTTTGTCTGTGTGTTAACACACACCACGATTACTGTTCCTGTCATGTCCCATACAACTTTTATTATTAATTTTTTTTTGTCAGCTCATTTTTTTTTTCTCAAAAGGGAAGCTTTATATTACAGTCATAAATAGAAACCAGTTTTGTTGCTTATAAATAGAAGGTACTGGGAAAACTAAGTACACATGAAAACCAACACGGTTACTAAACGCCAGCTTCACGCTGCAGTTGCCTGCCAGGACTCTGAGACAGGGCTGGCTGCAGATTGTCAAGTCTAGGGAAGAGGCACATTAACACCAACCCTGACTTGGTCTTTGAAAGACGCTGTGATTTAATTTTGCACCCATGAATCCTCTTGACGTTGTCTCTAAATTACAAGTCAGTACTTGGTGGCATTCTACTTTGAAATCAGGGAGTAGTTTGGTCCCCATATGGCAGATGAGGAGTTAGAGATACAGAATGTGTCACAGACAGTTAAGCTGGAGCTCAGAGCTCCTGCCTGGCCCACGAGGTCACTCTGTCCAAAGGGTGCTCAAAAGATTCTGGGCATCTATCCAGGAGGCCAGGTGGTTTGTGGGTCCTGGCATGCCCCCTCCAAACCCCTGGCTCAGTCTCACCCTGAGAGCACCCAGGGTCAAAACTATCATCCTCTTTCCAGGCCAAGGGGCCATAGGAAAGCTGTGACTTATGACAGAGGTCCGGTACAAGAGGCTGGACTGGGCCAAGGCAGGGCCGCAGACCGGGCTGGTGCTCCAGAGCCTTGGCCGGATCAGAATCGGCCCTCTCGGGTGACTGAGCTCATTCTTGTCCCCATAG
Seq C2 exon
ACTTCTCAGAAGTTCCCAAGGGTGCTTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAACCCAAGAGGGAAATGAAAGAACCCAAGAAGGAGGGGGAGGAGGAGGTACCAGACACCCAGGAAAAGGGAGAGCAGGAGGAGGGGCGAGAGCGCAGCCGTCGGGCCGCGGCTGTCAAAGCTACACAGACACTACAGCCCACTGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653:ENSRNOT00000014158:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGACCAAGACTGTGGCT
R:
AGTGGGCTGTAGTGTCTGTGT
Band lengths:
357-1469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]