BtaINT0056498 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048125 | ENTPD2
Description
Bos taurus ectonucleoside triphosphate diphosphohydrolase 2 (ENTPD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001105648]
Coordinates
chr11:106188282-106188660:+
Coord C1 exon
chr11:106188282-106188416
Coord A exon
chr11:106188417-106188519
Coord C2 exon
chr11:106188520-106188660
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
GCCGTACCTTTGGCCCGCAGGCC
3' ss Score
9.19
Exon sequences
Seq C1 exon
CTGCAGGCTCGGGCGCCGGACGACCGAGCCCGCCTGCCCGACTACTGTGCCGGGGCGATGTTCGTGCAGCAGCTGCTGAGCCGCGGATACGGCTTCGACGAGCGCTCCTTCGGAGGCGTGACCTTCCAGAAGAAG
Seq A exon
GTGGGAACTCGGGAGTGGAGGGGCGGGGCCGCCCGGGCCGGGGTGCGAAGGGGCGGGGCCGCCCTGGCTGCGCCGAAGCTCAGGCCGTACCTTTGGCCCGCAG
Seq C2 exon
GCCGGGGACACTGCGGTCGGCTGGGCGCTTGGCTACATGCTGAACCTGACCAACCTGATCCCCGCTGACCCGCCTGGGCTGCGCAAAGGCACAGACTTCAGCTCCTGGGTCGTCCTCCTCCTGCTCTTCGCCGCCATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048125:ENSBTAT00000063714:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(6.3=57.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCGACTACTGTGCC
R:
TAGCATGGCGGCGAAGAG
Band lengths:
244-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development