MmuINT0057677 @ mm10
Intron Retention
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25400564-25401321:+
Coord C1 exon
chr2:25400564-25400698
Coord A exon
chr2:25400699-25400769
Coord C2 exon
chr2:25400770-25401321
Length
71 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GATGCCACGCCCTCTCTTAGGCG
3' ss Score
4.42
Exon sequences
Seq C1 exon
CTTCAGGCCCGAGTACCCGGACAGCAGACCCGCCTGCCTGACTACTGCGCTGTAGCCATGTTCATACATCAGCTATTGAGCCGCGGTTATCGCTTCGACGAGCGCTCTTTCCGTGGAGTGGTCTTCGAAAAGAAG
Seq A exon
GTGGGTAAATGGCGGGGTCAGGAGGATTCCTCGTGCGGTCTCTTTGAGGCTGATGCCACGCCCTCTCTTAG
Seq C2 exon
GCGGCAGACACGGCTGTCGGCTGGGCGCTGGGCTACATGCTGAATTTGACCAACCTGATTCCCGCTGACCTCCCGGGACTACGTAAGGGCACCCACTTCAGCTCCTGGGTTGCTCTCCTGCTGCTCTTCACAGTCCTGATCTTGGCGGCTTTGGTCCTGCTCTTGCGCCAGGTGCGCTCTGCCAAGTCCCCAGGCGCCCTCTAGGGGTGCGCTGGGAGCTTCTCCCAACTCCCGGCTATCTCTCTTCCCGAGGGCATCTCTGACCCTGAAGCAGCCTGGACGGTCCTTATCTACACTCACAGAAAGTCTACATGGGCAGCCCTGAGTGTTCTCAATTAATCCTCCGCTCTCTTCCTGGGATGTCAGGTCTCTTAGCCTGCGACTCAGGGTGAGGTCCATTCCGAGTGGAGCCTCTGTTCTGATTGATCTTCAGGGCCCTGGGTACTTTCTGTCTGGGCCTTTAGAAAGGCAAGCACCAGAGACTACAGGCTAGGAGTCAGCTCCATGCCTACTTGTAAAAAAATTTGTAATAAAAGATTTTTTCCTAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085:ENSMUST00000028328:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(6.6=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCGTGGAGTGGTCTTCG
R:
CAGGACTGTGAAGAGCAGCAG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types