Special

HsaINT0056493 @ hg19

Intron Retention

Gene
ENSG00000054179 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:HGNC Symbol;Acc:3364]
Coordinates
chr9:139942553-139943458:-
Coord C1 exon
chr9:139943393-139943458
Coord A exon
chr9:139943313-139943392
Coord C2 exon
chr9:139942553-139943312
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GGCCACGCCCTTCCCCGCAGGCC
3' ss Score
9.5
Exon sequences
Seq C1 exon
CAGCTGCTGAGTCGCGGCTACGGCTTCGACGAGCGCGCCTTCGGCGGCGTGATCTTCCAGAAGAAG
Seq A exon
GTGGGCTGGGGCGGGGCGGGGCGGGGCCGACCTTGCGGGGCGGGGCCTCTCGGGAGCTGAGGCCACGCCCTTCCCCGCAG
Seq C2 exon
GCCGCGGACACTGCAGTGGGCTGGGCGCTCGGCTACATGCTGAACCTGACCAACCTGATCCCCGCCGACCCGCCGGGGCTGCGCAAGGGCACAGACTTCAGCTCCTGGGTCGTCCTCCTGCTGCTCTTCGCCTCCGCGCTCCTGGCTGCGCTTGTCCTGCTGCTGCGTCAGGTGCACTCCGCCAAGCTGCCAAGCACCATTTAGGGGCCGACGGGGGCAGCTGCCCCATCCCTCCCCCAACCCCTGTATCCCCACCCCGTACTCCCACCCCTCCCACAACCCCTGTACCTCCCACCCCTGTATCCCCACCCCTCCACCCACCCCTCTCCCAACCTCTCTCCCCGCCCCTGTATCCTGCATTCCTCCACCCACCCTCTATCCCCCACCGCTCCACCCCACCACTGTCTTCTCCATCCTTCCACCCCACCCTCAGCGTCTCTGCCCCTAAGGCAGCCCAGGAAATAGGAACTGAGACTCTGGTACCCACAGGAGCCTGGGTGGGCAAAGAGCGCTCAATCCAGCTCCTTGAACCCCTCCAGCCCGCTTCAGCCTGGGCATCACTGCAGGCCCCGTGCTCCTCCTCCTCCTCCTCAGGGCTGGGTCTCCAGAGAGTGGGGCCTTGGTCCTGAGAATCAGCCCTTAGAGGCTCCTTCTGTGTAGTCTGGGTCTGTACTGGGGAGGGTCACAGCCCACGGGCTGGCAGCCAGCCCAGCACCTACTTGTAAAAATTTTGTAATAAAAAGTTTTTCCTAGAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000054179-ENTPD2:NM_001246:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0115012=GDA1_CD39=FE(10.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(6.3=39.7)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGGCTTCGACGAGC
R:
GAAGAGCAGCAGGAGGACGA
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development