BtaINT0056591 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112847637-112848382:+
Coord C1 exon
chr5:112847637-112847876
Coord A exon
chr5:112847877-112848293
Coord C2 exon
chr5:112848294-112848382
Length
417 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CCAAATGGTTTCTCTTGCAGTTG
3' ss Score
8.53
Exon sequences
Seq C1 exon
GATTACTTTGATATTGTGAAGAGCCCTATGGATCTTTCTACCATCAAGAGGAAGTTAGACACTGGACAGTATCAGGAGCCCTGGCAGTATGTGGATGACATTTGGCTCATGTTCAACAATGCTTGGTTATATAATCGGAAAACATCACGGGTGTACAAATACTGCTCCAAGCTGTCTGAGGTCTTCGAACAAGAAATTGACCCTGTCATGCAAAGCCTTGGATACTGTTGTGGCAGAAAG
Seq A exon
GTAGGAAATTTTTGCACAGATAAGAATTACAGTGAAAACTTGACCAGTTAGAATCCTTGGATCATCAGGTTTTAAGTTCATCTTGAGTTAGGGACTTGGTCATTTTTGCCTGCGGGGCACTGTGCCTGGCATGTGCTAGTTCCCCTGTGCGTGCCAATTCACACTGAGCTGTTTGTGCCCTCTTCAGTTGTTTGGCAACTGGTGGAGAAGTAACAGCTATTAAGCTTACCTCAGAGTGGTGGAATAATACAGTAGTAAACTGGAGTAGTTTTAGTTCGGTGAACTGTCTTGGAATCTGAAATTGCCTATCGTGAGAGACATAATGAGGACTAAGGCTTAAGTTCTCTTTCTGATTTGCCAGTGTAAATATTTTAGCTTGCCCTTCAAACCATATTCACCAAATGGTTTCTCTTGCAG
Seq C2 exon
TTGGAGTTCTCTCCACAGACACTCTGTTGCTATGGCAAACAGTTATGCACAATCCCTCGTGATGCCACTTACTACAGTTATCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198:ENSBTAT00000021556:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(64.4=70.0),PF060018=DUF902=PU(28.6=15.0)
A:
NA
C2:
PF060018=DUF902=PD(66.7=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTTTGATATTGTGAAGAGCCCT
R:
TGTTCTGATAACTGTAGTAAGTGGCA
Band lengths:
326-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]