BtaINT0056835 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33505030-33505350:+
Coord C1 exon
chr13:33505030-33505119
Coord A exon
chr13:33505120-33505201
Coord C2 exon
chr13:33505202-33505350
Length
82 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TTTGGATTCTTCTTTTTAAGCCT
3' ss Score
5.52
Exon sequences
Seq C1 exon
GTTCTGTCTGGCTCTTCAGAAGCTGAGGAAGAGAATGATCCCGATGGCCCTTTTGCTTTCCGAAGGAAGGCAGGCTGTCAGTACTACGCT
Seq A exon
GTAAGTGTGGATTGTCTTTGTAAATAACAAACGGTTTACCTTTAGTTGACAAAAAATAACAATTTGGATTCTTCTTTTTAAG
Seq C2 exon
CCTCACTTAGACCAAACTGGCAACTGGCCTTGGACTAGTCCTAGCGACGGAGGAATAGGGGATGTGCGATACCGATACTGCCTGACCACCCTGACTGTGCCCCAGCGGTGCATCGGATTTGCACGAAGACGGGTTGGGCGCGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552:ENSBTAT00000002038:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCTTCAGAAGCTGAGGA
R:
TCAGGCAGTATCGGTATCGCA
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development