GgaINT0101659 @ galGal3
Intron Retention
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14068727-14069047:+
Coord C1 exon
chr2:14068727-14068816
Coord A exon
chr2:14068817-14068898
Coord C2 exon
chr2:14068899-14069047
Length
82 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TTGTTTGTAATTATTTTAAGCCT
3' ss Score
5.1
Exon sequences
Seq C1 exon
GTTTTGTCTGGTTCTTCAGAGGCTGAGGAAGAAAATGATCCCGATGGTCCTTTTGCCTTCCGTAGGAAAGCAGGCTGTCAGTACTATGCT
Seq A exon
GTAAGTAGAATTTTCTTGTGTATTGTAAGACAGAGTGTTGTTGGGAAAATCCGCGTGTTTAATTGTTTGTAATTATTTTAAG
Seq C2 exon
CCTCATTTAGACCAACCTGGCAACTGGCCATGGAGTAGCCCTAAAGAGGGAAGATTAGGAGATGTGCGTTACAGATACTGCTTAACCACTCTGACAGTACCCCAGAGGTGTATTGGGTTTGCACGAAGGCGGGTCGGCCGTGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.180
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTCCTTTTGCCTTCCGT
R:
GCCTTCGTGCAAACCCAATAC
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]