DreINT0063549 @ danRer10
Intron Retention
Gene
ENSDARG00000101579 | epc1a
Description
enhancer of polycomb homolog 1 (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-070629-5]
Coordinates
chr12:40963674-40964431:+
Coord C1 exon
chr12:40963674-40963763
Coord A exon
chr12:40963764-40964282
Coord C2 exon
chr12:40964283-40964431
Length
519 bp
Sequences
Splice sites
5' ss Seq
GCTGTAGGT
5' ss Score
3.41
3' ss Seq
TTTCTTCGTTGTTCCCCCAGGCC
3' ss Score
11.59
Exon sequences
Seq C1 exon
ATACACTCTGGCTCGTCAGAGGCCGAGGAGGAGAACGAGCCTGATGGAGCGTTTGCCTTCAGGCGGAAAGCAGGATGTGTTTATCACGCT
Seq A exon
GTAGGTGTCCAGACCTGACCTCATATCTCATACCTTGTTCTTCCTCTGTTACACATCCTTTCATCGTTCCTCTTTCCTCTCCACTATTGTTCTATACCTTGCTCCGTCTCCCAGTGGGCACTGCAGTCATGTAAACATTACAGCTCTAGTAAGCTGTCTTGCTGTTTTGTTTTTGTTTTCGACCAATGAAAATGGCTCCAGAGAAAGCCAGACCAAAACTTTTGTGCATCCTCAATTGTGATGCCTCAGTTCTTTTCAGTGTATGTGCATTTTGTAGTGTAGCATCCTGGCTAAAAGATGATATACTTATTCACTGATGGTTCACAATTCATTTATTGGTCACTTACCATAGAACCATTACACAATATAGTTAAAAAATAATAATAATGCAGCTTGATCATGTGCTCTTTATAAACAAACAAATTCAACCATATATTGACTATATTTTGTTTGTTTGTCTTTATACTCTTTTTCTCAGAAAGGTCTCATTCAATTTGGTTTTCTTCGTTGTTCCCCCAG
Seq C2 exon
GCCCGTCTGGATCAGAGCGGCGACTGGCCCTGGTCTGGAGAAGCGGACGGAAGGTCATGTAACCCGCGCTTTCGGTACTCTCTCACCACTCTCACCATTCCCCGCCGCTGTGTCGGGTTGGCACGGCGACGGGTGGGACGTGGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101579:ENSDART00000158811:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACACTCTGGCTCGTCAGA
R:
CGTGCCAACCCGACACAG
Band lengths:
215-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]