GgaINT0050586 @ galGal3
Intron Retention
Gene
ENSGALG00000012453 | EPC2
Description
NA
Coordinates
chr7:36379814-36380965:+
Coord C1 exon
chr7:36379814-36379903
Coord A exon
chr7:36379904-36380819
Coord C2 exon
chr7:36380820-36380965
Length
916 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGG
5' ss Score
4.86
3' ss Seq
CTTTCCTTTATTCTTTACAGCCT
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTACCCTCACCGGTATCAGAAGCAGAAGAGGAAAATGATCCTGATGGACCTTGTGCTTTCAGGAGAAGAGCAGGATGCCAGTATTATGCT
Seq A exon
GTAAGGCTATCTGCTGTTGTGTTTAGTGTGTTGGGTGTTCTTGTTTTTGTTTTCGTTGGTATATTGTTAATGGAATAGTTCTTTTTAGTCCCACTTTCATTATGAAAACCATGATGATTTAGTGACTCCAAAGAAAATCTGAGTTGTTCACAAGAACGTTTTTCCTTTTACTGTTCCTCTGACTTCCAAAAGGTAACACAGAGCACTGCCAGCAGCCTAATTCAGTCGCTGTTTGAATGGTAGGGCTCCCACCCCTTCCATACATTCCCGTTGGTTTTCCTAATGCATCCTTTGTTCCCAGCTTATAAAGCTCATGGGATGCTACTTGTCTTAGTTCTCAGACATGGGCATTGATTGGAGTTGGTTGTAAAAGCAAAGTGGCTTAGCTTGTTACGGACTTTTTGGTATGGTATGTTGGAAGAACATTACATTGCAATTGTAGCAGTGAGCAGAGGAGAAAGTCTGATTAAATGTTCCATCATCTTCTCAGAACTACTGATAGTGGAACTTCATACTGAGTATGGGTTTGTAGATGGGGAGCTGCTGCCTATGGAGGACTAACAGAAGGAATGTGCCATGTTGGGTCTGGTTTTACTTTGCTCACTTCCCACCAGAGAAGTGAAGTTGCATGGCAAAATACATTTTTTAACTGTATAGTGCTCTGCCTATAACTCTCTGGAGATGTAACTTAGTTGCAAGTTGTCTGCTTCAGAAGCCCAAACAATCTCCCTGAGTTAGAGCATGGGCATCTCCCGCAAGTTGTGCTGTAAGTTCTTAGCACAGCACAGATGCGTGGTGGCATCTGCTTCTGTTCCTGTTGTGCAGGTGTCTTGCTACTGTGATCCCTTAGAGAACACCACAGACTACTTCGTTTTTTCAAGAATGTGCAAAAACAGCTTTCCTTTATTCTTTACAG
Seq C2 exon
CCTCGTTTGGACCAAACTAATTCTTCATATGAAAATTCAGAATTGGCAGAATTGGACAAACTGAGGTTCAGGCATTGCCTTACAACCCTTACAATTCCAAGAAGGTGTATAGGATTTGCAAGAAGACGAGTTGGCAGGGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453:ENSGALT00000020355:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCACCGGTATCAGAAGC
R:
CACCCCTGCCAACTCGTCTT
Band lengths:
230-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]