MmuINT0058054 @ mm9
Intron Retention
Gene
ENSMUSG00000069495 | Epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278321]
Coordinates
chr2:49390775-49392244:+
Coord C1 exon
chr2:49390775-49390864
Coord A exon
chr2:49390865-49392095
Coord C2 exon
chr2:49392096-49392244
Length
1231 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
TTTTTTCTCTTTCTTTGCAGCCG
3' ss Score
12.43
Exon sequences
Seq C1 exon
GTGCTGTCTCCAGCTTCAGAGGCTGAGGAGGAGAATGACCCTGACGGTTCCTGTGCTTTCAGAAGACGGGCAGGATGCCAGTATTACGCT
Seq A exon
GTAAGAACTTTGTTTTTTGTCATATTTTTGTGAGCTGGAATTAACAGATCATTCATGTCAAGGTAACGTAGGCTCAGTCTAAAAGTGGGAAGTGCATCAATATTCCTTATTTAATGCCTCCTGTGGCATGTGAATACCAGCAGAAGAAGATGAAAGATGCCAAATTCTTTCACAGAATATTAGAATTCATTACTTAGACAACTCCTATTTTCAAAATTACTTCATTTGGAGCTTTAATTACAGCTTTAGCAGTTGTGAAAATTAATTGCACATGTTTAAGTTGGCTTTAGAACTTTTGGTGACTTCTGGATATTCACTGAAGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAAGAGAGAGGGAGAGAGAGACCCAATAAGTATATTTTTATAGTTTATGGCAAAGTTGTCTGATAATTTCATCCATAAATTTCAGATACATTAGGAATCTCTTTTTGTTATTAATGTCCCATTTTGGGTGCAGTGTTTAGAGAATGGCCTTGGCGTCACAGTGCTAAAGTTTTCTGTCAGGTATATAACTATAGAGTAGAAAAGGTAGTTTTGCCCTGTTAGCATGGTTTATGCAAACCGTTTGACTGCATTATGTTATGCACAGATAGACAGCTTTTTTGAGGGCAGACTTGGTTTAGGAAGGATAGGGATTTGTTTTCAAGTTATGCTGATAGAAGGTGAGAAAACTCCTATCCAAGGGGGACAAAGTGCTGAGACAGAAAAACAGGATGATACATGTAATAAAAAGGCCAAGAAACAAGCTCTACGTTTCTTAAAAGCAAAGAACACTTAAGCTCAGCCTGTACATATGCTTCCACTAAATTTTTAGTTGCCTTTAGCACCCCCTAAAAAAAGTCATTCTAGTTTATCATGTAGAAAAGCTATAAATTAATAATTTTATCGCTCTCTATATAAAGAAACCTAAAACATATTCTTTAAAGGTATCTTTTAAATACATACTAAGTGTATGTAATTTAGAGTGGGTAATTTGGATAAGGAAACTTTATCTAATTTGATTAGCTTTTGATTTTAATTTTTTAAATTTTAACTGGATTAATACATTTTAGCCTCAGTTTTACAGTTTTTCATCTAAATTTTAATTGTTCTAATACAATTTGCAGTCATTTTATTTTTATCATGATTTAACTTTTCTTCATTTCAGAATTACTCTGAGTTATCTTTTTTCTCTTTCTTTGCAG
Seq C2 exon
CCGCGTTTGGACCAAGCTAATAACCATATGTGTGAAAATTCAGAGTTGGCAGACTTGGATAAGTTGAGGTATAAGCATTGTCTTACGACACTTACAGTTCCAAGAAGATGTATAGGATTTGCAAGGAGGCGAATTGGCAGAGGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069495-Epc2:NM_172663:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCAGCTTCAGAGGCTGA
R:
CACCTCTGCCAATTCGCCTC
Band lengths:
230-1461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: