RnoINT0055472 @ rn6
Intron Retention
Gene
ENSRNOG00000029447 | Epc2
Description
enhancer of polycomb homolog 2 [Source:RGD Symbol;Acc:1307271]
Coordinates
chr3:33725542-33726921:+
Coord C1 exon
chr3:33725542-33725631
Coord A exon
chr3:33725632-33726772
Coord C2 exon
chr3:33726773-33726921
Length
1141 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
GTTTTTCTCTTTCTTTGCAGCCG
3' ss Score
11.66
Exon sequences
Seq C1 exon
GTACCATCTCCAGCATCAGAACCTGAAGAAGAAAATGATCCTGATGGTCCCTGTGCTTTCAGAAGGCGGGCAGGATGCCAGTATTATGCT
Seq A exon
GTAAGAACTTTGTTTTTTGTGATATTTTTGTGAGCTGGAATTAACAGATCATTCATGTCAAGGTAACGTAGGCTGAGTCTAAAAGTGGGAAGTGCATCAATATTTCTTATTTAATGCCCCTGTGGCGTGTGAATACCAGCAGAAGAGGATGAAAGAGGCCAGATTCTTTCAAAGAATCAGCATCCTTTACTTAGACAGCTCCTGGTTTTCAAAGTTCCTTCATTTAGAGCTTTAATTACAGTTTCAGCAGTTGTGAAAATTGCACATGTCTAAGTTGGCTTTAGAACTTTTGGTGACTTCTTGGTGTTCACTGAAATATTGTGTGCGTGTGTACGTGTGTGTGTGTGTGTGTGTGTTATACACAGTAAGTATAATTTTTAAAATTTATGGCAAAGTTGTCTGAAAAATGTATCCATAAATTTCGCACACATTAAGAAATCTCTATTTGTTATTAATGTCCCATTTTGGGTGCAGTGTTTAGAGAATGGCCTTGACGTGCCTGTGCTGTATAACTATAAAATAGAAAAGGTAGTTTTACCTTTTAGCATACTTTATTCAAACCATTCGATTGCATTATGGTATGCACAGATAGACAGTTTTTTGAGGGCAGATTTAATGTAGGAAGGATAGGGATTTGATTTGAAGTTGTGTTGATAGAACATGTGCTGAGACAGAAAAGCAGGATGCTACGTATAATAAAAAGCTTTCCTTAAAGAGAAAGCTTAAACTTGACCTGTGCATATGCTTCCACTAAATGTTTAGTTGTCCTTCCAACCCCTAAAAATTCATTCTAGTTTATCCTGTAGAAAAACTATAATAATTTCATCCCTCTCTATATATATAAAGAAACTTAAAATTAAGACATATTCTTTATAGGTATTTTTAAAATACATGCTAAGTTAATGTAGTTTAGAGAGGGTAATTTGGATAAACAAACTTTTGATCTAATTTGACTAGCTTTTGATTTTAATTTTACAAATTTTAACTGGATTAATATATTTTAACCTCAATTTTTACAGTTTTTCATCTAAATTTTAATTGTTCTAATACAATTTGCAGTCATTTTTATCATGATTTAACTTTTCTTCCTTTCAGAATTACTCTGAGTTTTGTTTTGTTTTGTTTTTCTCTTTCTTTGCAG
Seq C2 exon
CCGCGTTTGGACCAAGCTAATAACCATCCGTGTGAAAGTTCAGAGTTGGCAGACTTGGATAAGTTGAGGTATAAGCATTGTCTCACAACACTTACAGTTCCAAGAAGATGTATAGGGTTTGCCAGGAGGCGAATTGGCAGGGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029447:ENSRNOT00000051953:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATCTCCAGCATCAGAACCT
R:
CTTCCACCCCTGCCAATTCG
Band lengths:
238-1379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]