BtaINT0056844 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018581 | EPC2
Description
Bos taurus enhancer of polycomb homolog 2 (Drosophila) (EPC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192242]
Coordinates
chr2:47549592-47550532:-
Coord C1 exon
chr2:47550384-47550532
Coord A exon
chr2:47549725-47550383
Coord C2 exon
chr2:47549592-47549724
Length
659 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TATATTATTTCCTTTTCAAGATA
3' ss Score
7.39
Exon sequences
Seq C1 exon
AATCGAAAGAATGATGAAGCCTCTTATGAAAAGATGTTGAAACTGAGACGAGAATTTAGTAGAGCCATAACAATTTTGGAAATGATTAAGAGAAGAGAGAAAACAAAACGAGAATTATTGCACTTAACCTTAGAAGTTGTGGAAAAAAG
Seq A exon
GTAACATTGCTATTCTTACATACCAGTAATGCTTCAGTCAAATGAAAGGCAAAATGTAACCAAATTTCAGCTTTATAACTATTGAAATTGATTATCTAACAATATCTACATTTTTTGAAAATTGTGATTGCTAGTTTTTGCTTTTTGTTTTTAAACCATTAAGTTGCCAGTTTGGGTTGCAAATTTGGGAGATATTTTTGTGAATAGTATAGATCCTCTGTTACACTTAATTTCTTGTTGTTGCAGAATTATTTAAGTGTATTTAGAAAAGAACTTGGAGATCGTATTAAAGTTTCTATTAAACACAATTTGAGAGAAATAAATGTTTAATTGATTTTTTTTTTTGATTAGTTAGGAAATACTTGTTTCGGTGCATTTTGAAAATGTATTCACCAATGTAATAATCCTTTTCCTGAAAATATGAAATGTATGAAGAGTCCATCTTCTGTGTATCTTAGAGATTAGGAGAGTTTTGTTTTTTACTAAATCCCAAATATGAGCTTCTTTATTCCCATGCGTTTTCTCTCTTAAGAATAATCCGATTAATTGTTGGCTCTGTCTGATTAGTTGTGTTCCAAGTAAATGATGTATCATTGGTTTTTTATTTCTTTTTTATTTTTGAACTGTAACATTTTCTTATATATTATTTCCTTTTCAAG
Seq C2 exon
ATATCATTTAGGAGACTATGGTGGTGAAATCCTTAATGAAGTGAAGATCAATAGATCAGAAAAAGAATTATATACCACTCCAGCAACTCTTCATAATGGAAATCATCACAAAGTCCAAGAATGTAAAACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018581:ENSBTAT00000024730:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAGAATGATGAAGCCTCT
R:
TAGTTTTACATTCTTGGACTTTGTGA
Band lengths:
278-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]