GgaINT0050583 @ galGal3
Intron Retention
Gene
ENSGALG00000012453 | EPC2
Description
NA
Coordinates
chr7:36377467-36378004:+
Coord C1 exon
chr7:36377467-36377615
Coord A exon
chr7:36377616-36377871
Coord C2 exon
chr7:36377872-36378004
Length
256 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTAATTAATTTTTTTTTAAGATA
3' ss Score
6.83
Exon sequences
Seq C1 exon
AATCGAAAGAATGATGAAGCGTCTTATGAGAAGATGTTGAAATTAAGAAGAGAGTTTAGCAGAGCCATAACGATTCTGGAGATGATTAAGAGGAGAGAGAAGACAAAACGCGAGTTATTGCATTTAACATTGGAAGTTGTAGAGAAAAG
Seq A exon
GTAAGCTTGCAAATGATGTCACTTATAACTCTAAGGTTGTACCTTTCATTAAGTAGGTTTGAAAACAGCTCCTGTGATTTATTCCTGTAAGGATGCTCGTCTTCTGCACACATGCATGTCTGAAGGCATGTATTGCTTAGGTAGACTTCAGAAGCTAAGACAGAAAGGTTTTTATGCAGCCTCTTTGCCTGTTCCTTGTTGCTCTGATGTTTCCAGTGGAAATGCACTATTGTATTTTAATTAATTTTTTTTTAAG
Seq C2 exon
ATACCATTTGGGTGATTATGGAGGTGAAATTCTCAATGAAGTGAAGCTTAACAGACCTGAAAAAGAGATGAGCACAGCCGCATCCACTCTTCATAATGGAAATCATCACAAAGTTCCAGAATGTAAAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453:ENSGALT00000020355:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.711
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAGAATGATGAAGCGTCT
R:
TTCTGGAACTTTGTGATGATTTCCA
Band lengths:
268-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]