RnoINT0055469 @ rn6
Intron Retention
Gene
ENSRNOG00000029447 | Epc2
Description
enhancer of polycomb homolog 2 [Source:RGD Symbol;Acc:1307271]
Coordinates
chr3:33719083-33720376:+
Coord C1 exon
chr3:33719083-33719231
Coord A exon
chr3:33719232-33720243
Coord C2 exon
chr3:33720244-33720376
Length
1012 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TACTTTATTATCTTTTCAAGATA
3' ss Score
5.95
Exon sequences
Seq C1 exon
AACCGTAAGAATGATGAGGCTTCTTATGAAAAGATGCTGAAGCTGAGGCGGGAGTTCAGCAGAGCCATAACAATTTTGGAAATGATTAAGAGAAGAGAGAAAACCAAACGGGAATTATTGCACTTAACGCTGGAAGTTGTGGAAAAAAG
Seq A exon
GTAACATCGCTGCTGTTCCGTACTACGAGGGCCAGGCTAGCCAGGTTTTGTGATAGATGGTGGATATTGATAGTCTAGTAGAATTTCGTTCCTTCTTCTTTAAGATTTGTAGTTACTAGTTATTTTTAAAATTAGATTGGAATGGATTTGAATTTCATTGGAGTGGGGGTACTTTGATATAGAGCAGTGGTTCTCAGCTTTCTTAATACTGCTATCCTTTAATACAGTTCTTCACTGCTGTGGTGACCCCGACCATAACAGTATTTCATTGCTACTTTATAACTATAATTTTGCTACTGATTTGAGTCATGATATAAATAGCTGATAGGAAGGATATATATGACCCAAGGGTATGAACATTGAGAACCACTGATAGAGAGAATTGATTTTTTTTTTAGATATTGGCAGAATCATTGACTTTTCTTAATGAAACCTAAGGATTCTCTTGCCTATTTGTCTTTATTACTTTTTCTTGAACACTAAAATAAATGAATGGTTGGAAGGCAAAATTTCCTGTTTGCACCCTTCAGAATTATGATCTTGAAGTATTTTCCTGCATAATTAAATAAACTAAAGTTCTGTTAGGTTTTAGGGAACTTTGTGTTATTGCTGAAATAACCATTCAAAGCTATATTCCTAGTGCTTGACAAAACACATCATGTGGTTAATTTATGTATTGTATACCTTAGGCATTGTTAAAGTTTCTTGTTTATTGAATTTCAAATATGAACTGCTTTGTTTTTGTAACATTTCTCTTAACAATAATCTGATATCCTAAAGGCTTGGTGTTACATGCCTGTAATTTCAGCAGGAGGATCGGGAGTTGAAGCTACTTTGATGCCACCTGGCTGGACCCCTGAGGCCCTGTCTCACCCCTCCCTACCCCCCTACCCCAATTGATAACTCTGTTTTTTTTTGCTGGTTCAGTTACTTAAAATGTCATTATTTTGAATATATTTTTCTTTATAATTAAACTCAGTTTTATTTTCTTTTACTTTATTATCTTTTCAAG
Seq C2 exon
ATATCATTTGGGAGACTATGGGGGTGAAATCCTTAATGAAGTGAAAGTTAATAGATCAGAAAAAGAGTTATATGCCAGTCCAGCAACTCTTCATAATGGAAATCATCACAAAGTTCAAGAATGTAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029447:ENSRNOT00000051953:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.622
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGTAAGAATGATGAGGCT
R:
TTCTTGAACTTTGTGATGATTTCCA
Band lengths:
270-1282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]