BtaINT0057677 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18668787-18672630:-
Coord C1 exon
chr25:18672564-18672630
Coord A exon
chr25:18668855-18672563
Coord C2 exon
chr25:18668787-18668854
Length
3709 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGC
5' ss Score
8.56
3' ss Seq
GGATTGTTTTACATTTTTAGGCA
3' ss Score
7.42
Exon sequences
Seq C1 exon
GCGACTTCCGGCAGTTGGGCTGAGGCTAGAAAGGAACGTCAGGGATGGCGACCAAGAGACTCGCACG
Seq A exon
GTATGCAAGGCGGTTCTGGGCGGTGGCGGGGGATCGCTCCTGATCCGGCGCTGGCGTCCGCGTCAGTGTCCGCGGTGTTCAGCTTCCATTTTCTGCAGTTAGGGCGTGCACTGGCCAGCCTGAACTGGAAGGTCACTCTTCTGGGACTTCAGTCTCGAGCCTCAGTCAGCTCTCTGTTGGAGCGTGAAGGACCAGGGAGGGCTCTCTACTCTGTGCCCCTCAGCCAGTGTCTGCCTATTCTAGGTCTCCGGGAACATTAAGAACGGCCCTAGGGGACCATTTGGAGGTCACCGGCAGCTATCAAGATTACTCCACCTATCAAGCTGTTCACCCTACCACTTACTAGTGATCTGTTTAATTCACAGTGTGAATCATGGCCTCTTTCCTTGGACACGCTTTTCACGTTTCTAATTAATAGAAACAGTGGAATGCATTCGTGAAAGCATGGGTTTCACAGTTGGATCATCCTGGTTTCACATAGTAAATACGTGTTTTCTGGCAAATTGCCGAATTTGATTTCTCACCCATTAAATGTAGGTAGCAGAAAGGACTGTTTTGTACAGTTGTTGAGGATGAAATGAGATCACCATCTTGATTCAGTGCGTAATATGTCCGTAAAGAATCTGCCTGCAGTTCAGGAGACCGGGATTTGATCCCTGGATTGGGAAGATCCCCTGGAAAAGGAAATGGCACCCCACTCCAGTATTCTTGCCTGGAGAATTCCTTGGACAGAGGATTCCAAGAATCAGAAGACTGACTAAACTACCACCACCATTATATGGTAAAGAATCAATAGATGTTAGCCATTATTCTCAACTTCCCATCACAGGTCAAACAGGGAAGCTAGAATGAGTGGTGTCTGCCTGGTCTACCTAGCAAAGTATTGAATAGTTTTGTCTCAGGACACTTAAGATGTCAGTAAGCTAAAGACCTCAGTAAGCATATAAGCAGATATTCGCTGGAGAAAGACAACCAGACATGACTGTCTCAATATTAGAGAAGCCATTTTGTGGTCTGAGGCTGGCCACAGTGATCCTTAAAAAAATTTTTTTTTTATTTTGTTTTTGGCTGCCCTGGGTCTTTGTTGCTGTGCGCAGGCTTTTCTCTAGTTGCAGCAAGCAGAGGCTACTCTCTAGTTGTGGTCTGCAGGTATCTCATTGAGATGGCTACTCTTTGTTTCAGAGCACAGGCTGTACGGTGCACTGGCTTTGGTAGTTGGGGAGGGCGAGCTCAGTAGTTGTGCTCCATGGGCTTAGTTGCCCCTCAACGTGTGGAGTCATCCTGGAGCAGGGATTGAACCCATGTCCCCTGCATTGGCAAGTGGATTCCTAACCACTGGACTGCCAGAGAAGTTCAGAAATTAATGCTATTAAAGAAACAAAGAATGCAGAAACAGCTGTTACCAGGCAAGAGAAGTAACAGTGGCAAAGATAATATCTCAGAAGTAAAGACTGTTAGTCCTGAGAGTTTCCTAGTGGTCCAGTGGTTAGGGCTCCCAGCTTCCATTGCAGAGGGTACAAGATTGATCCCTGCTCTGGAAACCAATATCCTGCAAGCTGCCAAAAGGAAAAAAAAAAATTCCTAGTTCTGTTTCAATGGTAAAAATTAGCCTGAAGCACTCAACCACCCAATTACCTGGAACCCAAGGGGTGATGATGTTGACCTTTTTGACTCTCTTGACTTCAATCAGCTAATGTTTAGAAGCTCAACCACCTAAGCCCTTACATGAAACATGCATGTACCCTTAGCTTAAACTTACCCAGTTTTGCAGTTTAGAGGCAACACTGGTGTGGGAAACACCAGGAAAGATCCCTAGTGTTATACTTACTTGCTGCAATTAATAAATCCTTCCTTCTGCTCTTTGCCTTGGTGGTCTTTTGGCTTGACACCTACCAAGAGGCTTCAGGTAACAAGCTATTCCCTTTCTGTGGACTTAGAATATTGCCCATAAGGATCCTTTATTATATATTACCTTACACTAGTTTTCCATGAATATCTAGTTTACTTACCCAGATATTTTAAACTCCTAGAAGACTGGACCTGCCCTCTCTCCTCTCCACTGTGCTCTTCACATAGCAAAGGCTGGAAAAAAACAAAAGCAAAATTAACTTAGGTTTTCAATGCATCTTTACAACCACTTGAGTTCCTCATTATTACTATAAAATAATAGGAGCACAGAGAAACAGTCTGTTTGCAAATATGCACTTTGAAGCCCATGCAGGGAGAATGACTTGTTAAGTCGCTTAGTCATGTCTGACTCTTTGTGACCACATGGACTGCAGTATGCCAGGCTTTTCTGTCTTTTACTGTCTCCTAAAGTTTGCTCAAACTCATGTCCATTGAGTCGATGATGCCATCCATCCATCTTCTGTTGCCCCCTTCTCCTCCTACCCTCAATCTTTCCCAGCATCAGGATCTTTTCCAATAAGTCAGCTCTTCGCATCAGGTGGCAAAAGTATTGGAGCTTCAGCTCCAGCATCAGTCCTTCCAGTGAATATTCAGGGTTGATTTCCTTTAGGATTGACTGGTTTGATCTTGCTGTCCAAGGACCTCTCAAGAGTCTTCTCCAGCACCAGAATTTGAAAGCATCAGTTCATCAGCATTCAGCCTTCTCTGTGGTCCAACTCTCACATACGTACTTGACTACTGGAAAAACCATAGTTTTGACTAGATGGACCTTTGTCGGTAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGCCATAGCTTTTCTTCCAAGGAGCAAGCATTTTTTGATTTCATGGCTGCAGTGATCATCCACAGTGATTTTGGAGCCCAATAAAATAAAGTCTGTCATTGTTTCCATTGTTTCCCCATCTATTTGCCACGAAGTGATGGGACCAGATGCCATCATCTTCGTTTTTTGAATGTTGAGTTTTGAGCCAGTTTTTTGATTTTCTTCTTTCACATTCATCAAGAGGCTCTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGATGTTATTGATATTTCTCCCATCAGTCTTGATTCCCCCTTGAGCTTCATCCATGTCAGCATTTCTCATGATGTACTCTTCATATAAGTTAAATAAGCAGGGTGACAATATACAGCATTGACTTACTCCTTTCCCAATTGGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCTTGACCTGCATACAGGTTTCTCAGGAGGCAGGTAAGGTGGCCTGATATTCCCATCTCTTGAAGAATTTTTGACAGTTTGTTGTGATCTACAGTCAAAGGCTTTAATGTAGTCATTGAAGCAGAAGTAGATACTTTTCTGGAATTCCCTTTTTCTATGATTCAACACATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTTTAAATCAAACTTGTACATCCGGAAATTTTGAGATCACGTACTGTTTGAAGCCTAGCTTGAAGAATTTTGAGCATTACCTTGCTAGCATGTGAAATGAGTGCAGTAGTTTGTGCAGTAGTTTGAACATTCTTTGGTAGAATGACTGCTAAAGTCAGAAGAGTGCAAAGAACCAAAGTCTTTTGCCCTCAAAGTCTAGTTCAGTTTCCTCTCAATCACAATACATTAGTATATTAATGAGGGTTATACCATCAGTTTGTTAACTTATGTAAACAGGAATATGAATGATTTTGTTAAACATACCTGGATTGTTTTACATTTTTAG
Seq C2 exon
GCAGCTTGGATTAATTAGGAGAAAATCAATTCCACCAGCAAATGGAAACCTAGGAAGAAGCAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448:ENSBTAT00000008456:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]