MmuINT0058878 @ mm10
Intron Retention
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:119792431-119794058:-
Coord C1 exon
chr7:119793918-119794058
Coord A exon
chr7:119792499-119793917
Coord C2 exon
chr7:119792431-119792498
Length
1419 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
CCTGTGTCTTGCATTTTTAGGCG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GACGGCCGCCGCCGCTCTACAAGCGCCCGCTTCCCTTGCCGCGCCGGCGTTTAAACAGACCGGAAGTGGGGGCGTCCGACTTCCGGCCGTTGAACTCTGCGAAACCCAGGGTCCGGGGATGGCGACCAAGAGACTGGCGCG
Seq A exon
GTACGTTAGGGGGTTCCCCTTAGGGTGGGCGGTGTTCATCCGCAGTCGTTTGGTCTGGATCTGAAAAGGGCCCTGGTCTTCTCGGGCCCCACGTCGCCATTCGCGACAAGTTGGAGGAGCCCGAGAAACCCCGGGTCCTCCCTACCGTGGCATGCTCTATCAGGTCTGTTCATTCTAGACCCCTGGGACCTGGAACGTGACAGCTCTGCACACTGTTCTCAGGCAGGTGCCACTGCGCCCAAGTGACCTGCCTAGTCCAGTTTTATTGTCAGAATTACCACAGACTCTCTCAGGTTTTTTGGGGGGGGGTGGGGGGGAATATGCTGTGCACAGATTTTTGGATGCGTTGTACACATTTGTTGAGATTGTGGACACAGTATCAAACTTACCAGGCATAGTGGAATGGACCTACAATACCAGCATGGAAAGTTGGAGGCCAGCCTGGTCCTCATGGTGATGTTCAAGCAGGCGATGGCTAAATAGTGAGACTGTCTCAAAACAACAACAAAACCAGATTCAAAACAAAACCCCTATCTGATGTATTAATGAATAGCATAGGATTCAAGCGTGAAAAGTCCTGTCAAAGGTTAACATACTATGGCCATCTTTAGGCAAATCATTTACTTTTCTCTTGCATAAAATACAGGTTGCAGACATGTCTACCACCTAGAATTGTTTAAAAGAAGTCACCATCCTAATTAAATATTTGCTGAAGAAGTGACTAGTAAATGTTAGTTTTTCATTCCAAATCCCTACATTGGCCTCACGTCTTGTCTTTTTCAAATAGCCAAAATAACTATTCCAGGTGTCTGTCTACTTAAAGTTGTATTCGTCATCATTTGGGATCTTCCCTTCTTTGGACTGCAGTGTATTGCTGTTGGGAGGTTTGTTTGTTTTGTTTTTGTTTTTGTTTTTAATCATAGATTACCTTTCAGTAGTACTCTGGTAATCTTTCTCCCCTCCATTTTTAGAGTTTAAGCACAGGCATCATCCCCTTGGTACATAGCAAAGGCTTGAAAAATACATCTTTATAGTCAATTCCTCGGTACTACTATAAAACGTGAACAGGTAAGAGTAGTGTTTGTGAAGCCCGCTCAGGTAAAATGGACACTAAACTCAAGAGAGGATGGCCATTCGCACAAGGACCTAGGACTTTTAAAGTCTAGCCCTCCTTTCCTTCAGTCAGTATGCAGCTGTTGTTTGAGGCAGGGTCCTGCTGTGTGCTGTAAGCTGTCCCTCAGTTCAGTTTGGCCGTGGCCTGCTGACTGCTGAGCCTCCAGGTGTGGGGCCCTCACACCCAGCTCCACTTACCGTACATTAGAGATGATTTTGCCATCTGTTTGGGGCTATTACTTTAATATCATATTCTAACTGCAGTGTAAATGAGTTTATTGATCTTCCTGTGTCTTGCATTTTTAG
Seq C2 exon
GCGGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAAATCCAGGAGGGAGCAGATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929:ENSMUST00000150844:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0092919=RNase_T=PU(7.1=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types