Special

MmuINT0058878 @ mm9

Intron Retention

Gene
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:126935945-126937572:-
Coord C1 exon
chr7:126937432-126937572
Coord A exon
chr7:126936013-126937431
Coord C2 exon
chr7:126935945-126936012
Length
1419 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
CCTGTGTCTTGCATTTTTAGGCG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GACGGCCGCCGCCGCTCTACAAGCGCCCGCTTCCCTTGCCGCGCCGGCGTTTAAACAGACCGGAAGTGGGGGCGTCCGACTTCCGGCCGTTGAACTCTGCGAAACCCAGGGTCCGGGGATGGCGACCAAGAGACTGGCGCG
Seq A exon
GTACGTTAGGGGGTTCCCCTTAGGGTGGGCGGTGTTCATCCGCAGTCGTTTGGTCTGGATCTGAAAAGGGCCCTGGTCTTCTCGGGCCCCACGTCGCCATTCGCGACAAGTTGGAGGAGCCCGAGAAACCCCGGGTCCTCCCTACCGTGGCATGCTCTATCAGGTCTGTTCATTCTAGACCCCTGGGACCTGGAACGTGACAGCTCTGCACACTGTTCTCAGGCAGGTGCCACTGCGCCCAAGTGACCTGCCTAGTCCAGTTTTATTGTCAGAATTACCACAGACTCTCTCAGGTTTTTTGGGGGGGGGTGGGGGGGAATATGCTGTGCACAGATTTTTGGATGCGTTGTACACATTTGTTGAGATTGTGGACACAGTATCAAACTTACCAGGCATAGTGGAATGGACCTACAATACCAGCATGGAAAGTTGGAGGCCAGCCTGGTCCTCATGGTGATGTTCAAGCAGGCGATGGCTAAATAGTGAGACTGTCTCAAAACAACAACAAAACCAGATTCAAAACAAAACCCCTATCTGATGTATTAATGAATAGCATAGGATTCAAGCGTGAAAAGTCCTGTCAAAGGTTAACATACTATGGCCATCTTTAGGCAAATCATTTACTTTTCTCTTGCATAAAATACAGGTTGCAGACATGTCTACCACCTAGAATTGTTTAAAAGAAGTCACCATCCTAATTAAATATTTGCTGAAGAAGTGACTAGTAAATGTTAGTTTTTCATTCCAAATCCCTACATTGGCCTCACGTCTTGTCTTTTTCAAATAGCCAAAATAACTATTCCAGGTGTCTGTCTACTTAAAGTTGTATTCGTCATCATTTGGGATCTTCCCTTCTTTGGACTGCAGTGTATTGCTGTTGGGAGGTTTGTTTGTTTTGTTTTTGTTTTTGTTTTTAATCATAGATTACCTTTCAGTAGTACTCTGGTAATCTTTCTCCCCTCCATTTTTAGAGTTTAAGCACAGGCATCATCCCCTTGGTACATAGCAAAGGCTTGAAAAATACATCTTTATAGTCAATTCCTCGGTACTACTATAAAACGTGAACAGGTAAGAGTAGTGTTTGTGAAGCCCGCTCAGGTAAAATGGACACTAAACTCAAGAGAGGATGGCCATTCGCACAAGGACCTAGGACTTTTAAAGTCTAGCCCTCCTTTCCTTCAGTCAGTATGCAGCTGTTGTTTGAGGCAGGGTCCTGCTGTGTGCTGTAAGCTGTCCCTCAGTTCAGTTTGGCCGTGGCCTGCTGACTGCTGAGCCTCCAGGTGTGGGGCCCTCACACCCAGCTCCACTTACCGTACATTAGAGATGATTTTGCCATCTGTTTGGGGCTATTACTTTAATATCATATTCTAACTGCAGTGTAAATGAGTTTATTGATCTTCCTGTGTCTTGCATTTTTAG
Seq C2 exon
GCGGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAAATCCAGGAGGGAGCAGATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-Eri2:NM_027698:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion (1st CDS intron)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0092919=RNase_T=PU(7.1=41.7)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types