BtaINT0058320 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004294 | EVI5L
Description
Bos taurus ecotropic viral integration site 5-like (EVI5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001099075]
Coordinates
chr7:17862672-17863060:+
Coord C1 exon
chr7:17862672-17862827
Coord A exon
chr7:17862828-17862913
Coord C2 exon
chr7:17862914-17863060
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCCCGCCCATCCGCCCCCAGGAC
3' ss Score
11.6
Exon sequences
Seq C1 exon
GCCCACCTGTCCCGCGGTGGCCGCTGGAAGGAGTCCCCGCGGAAGCTGGTCCTGGGCGAGCTGCAGGACGAGCTGATGAGCGTGCGGCTGCGAGAGGCCCAGGCGCTGGCCGAGGGTCGAGAGCTGCGGCAGCGCGTAGTGGAGCTCGAGACGCAG
Seq A exon
GTGGGCCGAGGCCGGCCCAGGGAGGGAATCCGGCGCCCGGGGTCGGGCCCTCGGCAAGGCCTTGACCCCCGCCCATCCGCCCCCAG
Seq C2 exon
GACCACATCCACCGCAACCTGCTGAACCGTGTGGAGGCTGAGCGCGCGGCGCTGCAAGAGAAGCTGCAGTACCTGGCGGCACAGAACAAGGGGCTGCAGACGCAGCTCAGCGAGAGCCGCCGCAAGCAGGCTGAGGCTGAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004294:ENSBTAT00000052616:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGACGAGCTGATGAG
R:
TACTGCAGCTTCTCTTGCAGC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]