RnoINT0056991 @ rn6
Intron Retention
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2590133-2590530:-
Coord C1 exon
chr12:2590375-2590530
Coord A exon
chr12:2590280-2590374
Coord C2 exon
chr12:2590133-2590279
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCTCTGATCCTCGTTTCCAGGAC
3' ss Score
10.8
Exon sequences
Seq C1 exon
GCTCATGTTTCCCGCGGTGGCCGCTGGAAGGAGTCCCCGCGGAAGCTGGTCCTGGGAGAGTTACAGGATGAGCTCATGACTATGCGTTTGCGTGAGGCACAGGCCCTGGCGGATGGCCGTGAGTGGCGGCAGCGCGTGGTGGAACTGGAGACGCAG
Seq A exon
GTAGGCCAGGCCCACACAGGGACACCACGGTGGACCCCCAGGCCATACATGACCACCCTCCTCTTGCTGCTGCACCCTCTGATCCTCGTTTCCAG
Seq C2 exon
GACAACATCCACCGCAACCTGCTGAACCGGGTGGAGGCGGAACGCGCGGCTCTGCAGGAGAAGTTGCAGTACCTGGCAGCACAGAACAAGGGACTCCAGACTCAGCTCAGCGAAAGCCGCCGCAAGCAGGCCGAGGCTGAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034:ENSRNOT00000001367:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTCCTGGGAGAGTTAC
R:
CTGCAACTTCTCCTGCAGAGC
Band lengths:
182-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]