DreINT0010182 @ danRer10
Intron Retention
Gene
ENSDARG00000052766 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr1:44559293-44560095:+
Coord C1 exon
chr1:44559293-44559466
Coord A exon
chr1:44559467-44559948
Coord C2 exon
chr1:44559949-44560095
Length
482 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
TTTTCTCCCTGTTTGCATAGAAC
3' ss Score
8.27
Exon sequences
Seq C1 exon
CATCATACATCTCGTGGAGGAGGAGGAGGTGGAGGAGGCCACTGGAAAGAGTCTCCTAAGAAGAATGCGATGAATGAGCTGCAGGATAAGCTGATGAGTTTGAGGCTGCGAGAGGCTCAGGGTCAGGCAGAACTCAAAGAGGTCAAGCTTAAAAACCTGCAGTTGGAAAGCCAG
Seq A exon
GTTAGAACTGCAATCAGTGCTATTTTATATTTAAAGACTATTCCATTTACACTATTACTAAGACTAATCAAATTCAAACGCAGTGCTTAGAAATACCAAAAAGTTTTTGTGCTGTTCCTTAATTAAATTAAATTTCCTGATTTAAATATTTCAGTGTTTGAACTCCAGTTATCAGAGGATTATAAGGCAAAAAAAATAAATACTTTTGCAGTAAATGTAACCCCCAACCATGATTTTTCTTTTACCAAACTTGACTGATTTCTTGGGTCCATGCTGGTTTCAGTAGGTCTTCTGCAGTATTTGTAATGGTTAGGATGCAGTTCAACAGATGACTCGTCAGAAAAATCTACCTTCTGCTACTTTTCCAAATCATCAACAAGAAGTCAAGTTATTATTTGTTGCTCTTACAACCGGGATCTTCGACACGACTTGTGTCAGGTAGTGTACACAATTTCCTAAAACTTTTCTCCCTGTTTGCATAG
Seq C2 exon
AACCAGATCAATGGCAAACTACTTGGCAGACATGAACAAGAGAGCACCAGCCTACAGGAGAGACTGCAGAACGCTCTTTCCCACAACAAAACACTACAAAGCCAGCTTAACGAAATGAAGAGAAAGCAGGCGGAGTCTGACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052766:ENSDART00000125037:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=NA C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATACATCTCGTGGAGGAGGA
R:
CTTGCAGTCAGACTCCGCCT
Band lengths:
319-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]