BtaINT0058322 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004294 | EVI5L
Description
Bos taurus ecotropic viral integration site 5-like (EVI5L), mRNA. [Source:RefSeq mRNA;Acc:NM_001099075]
Coordinates
chr7:17863139-17863413:+
Coord C1 exon
chr7:17863139-17863234
Coord A exon
chr7:17863235-17863317
Coord C2 exon
chr7:17863318-17863413
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGGCACGGCCCGCCCTCAGAGA
3' ss Score
5.23
Exon sequences
Seq C1 exon
AGCAAGGAGGAGGTGATGGCCGTGCGCCTGCGGGAGGCGGACAGCATGGCGGCGGTGGCCGAGATGCGGCAGCGCATTGCGGAGCTGGAGATCCAG
Seq A exon
GTGAGCGGTGAGGCCAGGGCGGGGCGCGCTGCGGACTGGCTCGGGGACCGGACCCCGTGCTGACTGGCACGGCCCGCCCTCAG
Seq C2 exon
AGAGAGGAGGGCCGCATCCAGGGCCAGCTGAACCACTCGGACTCGTCGCAGTACATCCGCGAGCTCAAGGACCAGATCGAGGAGCTGAAGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004294:ENSBTAT00000052616:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGGAGGAGGTGATGGC
R:
TCCTCGATCTGGTCCTTGAGC
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]