HsaINT0058473 @ hg38
Intron Retention
Gene
ENSG00000142459 | EVI5L
Description
ecotropic viral integration site 5 like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr19:7862972-7863280:+
Coord C1 exon
chr19:7862972-7863067
Coord A exon
chr19:7863068-7863184
Coord C2 exon
chr19:7863185-7863280
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATC
5' ss Score
4.28
3' ss Seq
TGACCTGGCGCACCCCGCAGAGG
3' ss Score
7.09
Exon sequences
Seq C1 exon
AGCAAGGAGGAGGTGATGGCTGTGCGACTGCGGGAGGCGGACAGCATGGCTGCGGTGGCCGAGATGCGGCAGCGCATTGCCGAGCTGGAGATCCAG
Seq A exon
GTGATCGGCGGGGCCGGGGTCGGGGGGCGGGGGCGGGGGCAGGGCCCGGGGCAGGAGCGGGGCCGGACCCCAGGCCCAGCATGGCACTGGCCCCGCGTGACCTGGCGCACCCCGCAG
Seq C2 exon
AGGGAGGAAGGCCGCATCCAGGGCCAGCTGAACCACTCGGACTCATCGCAGTACATCCGCGAGCTCAAGGACCAGATCGAGGAGCTGAAGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142459:ENST00000270530:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.483
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGAGGTGATGGCTGTG
R:
GGCCTTCAGCTCCTCGATCT
Band lengths:
186-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development