RnoINT0056983 @ rn6
Intron Retention
Gene
ENSRNOG00000001034 | Evi5l
Description
ecotropic viral integration site 5-like [Source:RGD Symbol;Acc:1561962]
Coordinates
chr12:2589778-2590049:-
Coord C1 exon
chr12:2589954-2590049
Coord A exon
chr12:2589874-2589953
Coord C2 exon
chr12:2589778-2589873
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TACCCCGGCCCTCCCGGCAGAGG
3' ss Score
8.11
Exon sequences
Seq C1 exon
AGTAAGGAGGAAGTGATGGCTGTGCGCCTTCGGGAGGCAGACAGCATGGCTGCAGTGGCGGAGATGAGGCAGCGCATCGCAGAGCTGGAGATCCAG
Seq A exon
GTGAGCCCCAGGAACTGGGAGGAGGGTGAGCCCCTGGGCTGGCCGTGCTCTGACCGACAGTACCCCGGCCCTCCCGGCAG
Seq C2 exon
AGGGAGGAGGGCCGCATCCAGGGCCAGCTGAACCATTCGGATTCATCGCAGTACATCCGTGAGCTGAAGGACCAGATTGAGGAGCTGAAGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001034:ENSRNOT00000001367:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGAAGTGATGGCTGTG
R:
TCAGCTCCTCAATCTGGTCCT
Band lengths:
181-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]