BtaINT0058349 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56265987-56267595:+
Coord C1 exon
chr19:56265987-56266159
Coord A exon
chr19:56266160-56267416
Coord C2 exon
chr19:56267417-56267595
Length
1257 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AGACCCCTGATGCACCCCAGGGC
3' ss Score
3.73
Exon sequences
Seq C1 exon
CTCCAAGCAGCTCGGGCCCACCCGACCCACAGGCCCAGAAGCTCCTGACACAGATGACCCGGCTGGAGGAGGACCTGGGGCAGATAGAGAAGCAGCTGCTGGCTTGGGCACGGGCCCCGCTGAGCCGCACCACACCACTCGAGGACCTCGAGGGCCGCATCCAGAACCACCAG
Seq A exon
GTGGGTGAGCCAGGGCAGCTGGGATAAAAAATGGTCCAGCCCTGGGGAGGCAGCTGTGGGGGCAGCCGCAGGCCCCCGAGGTGGAAGAAGTGAGCAGACAGTCCAGGGCTCCCTCAGGCTCCTTCCCATCCTGGCTCTTCACCTGACCTGCTCTGTGACTCTGGGCAATTCGCTTAACCTCTCTGGGCCTTGGTTTCCTCATCCCTGAAAATGGGCTTGCAGCATCCTAGGGGCGGTATCTCCGGGGTGGCTGACGGGGAGCCTCCCTGGAGAGAGTGCAGGGGTGTAAACGCGGTCACAGAAGGACTCAGAAATGCTAGCAGTGAAAGCCACCCCTTCCCCACACCCGGGGGTGGGGGGTCGGGGGGAGAAGTTTGGGTTGTGTCCTTCCAAACCGGTTTCTACTCAGATATATTGTTTGGATTTGGCTTTTAAAATGTGAAGCATGTTGTTCAAGATTGTGCACCTCGGTCTTCCTCACTCCGCCACGTTCTGGGGTGTTTTAGCTTGGTCAGGGGCCCGACCAGGGGAGGCAGGGCTCCAGAGGTGGGAGAGGTGTTTCAGCTGGGGTCCTGGGGGGCCAGGCAAGGAAGGAGGAGTGGCAGAAGGAGGCACTGTGGGGTGACAGCCTGGACAATACCTCTGCCCATGCTGGGCCCAGGTTACCACTACCCTGGGCAGGACCTTATTTCCCCGACCAGGGAGCGAACCCATGCCTTCTGCAGGGGAAGCGCAGTGTCTTAACCACTGGACTGCCAGGGAAGTCCCCGGTCCTTGGGTTTTGAAGGTCCTCTTCCACATCAGAGGTGTTGGGGGTCCAGTTAGCCTGGAAGGTGGGCAATATGTGGTGTGGAGCCAGCACTAATGGATCAGGGAATCGACGAGTGAATAACTGATAAAAGAATTGACAAAATCATAATCCCAAGTGGGTGGAGCTAGGGCTTTGCTGCTTGACTGGGGGGAGGGGGCAGGGAACTGAAGCTTTTGAGAACAGGACAGTGACGTGAAGACCAAGGTGGGCGGCAGCTCCTGACTCACAGGGTCTCATTTCATCCTCCCATCAAGCATTTGTAGATGAGGAGACTGAGGGTCAGAGAGGTTGACCTGCCTATGGTCATCTACCTGGAAACTGAGCCCGAGCGTGTCCATACCACATTTTGGAGGCCTCGCAAGCAGAGTTAGGTTGACATAGCGGGAGGGCTGGATGGAAGCCACCTGCCCAGAACCAGAGATCCTGAGACCCCTGATGCACCCCAG
Seq C2 exon
GGCACGGCCCAGCGGCTGCAGAGCCTGGGAGCAGAGAAGGAGGCGGCCCAGCAGAAGTGTGAGGCGTTTCTGTCGGGGCAGCCCTCAGGGCCCGCTGCCCTGCATCTGCCCGTGGTCCTCAACAGCGTCAAGAACAAATACAGGGATGTGCAGGTTCTCTGCAGCCTCTACGGGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCACAGGCCCAGAAG
R:
TTCTCCCCGTAGAGGCTGC
Band lengths:
330-1587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]