MmuINT0059570 @ mm9
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116089373-116090887:-
Coord C1 exon
chr11:116090715-116090887
Coord A exon
chr11:116089552-116090714
Coord C2 exon
chr11:116089373-116089551
Length
1163 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGCTCCACCCCTGACCCAGGGC
3' ss Score
5.46
Exon sequences
Seq C1 exon
CTCCGGCAGGCTCAGCCCCCGCTGACCCACAAGGTCAGACGCTCCTGTCACAGATGACCCAGCTGGATGGGGATCTGGGGCAGATAGAGAGGCAGGTGCTGAGCTGGGCCCGGAGCCCACTGAGCCAGTCTTCTTCACTGAAGGACCTCGAGGGCCGCATCCACAGCTGTGAG
Seq A exon
GTAAGTGGGTGGCCTTGAGAGCTTCAGGACAGGAAAGGGCCCTGCCCTGAGCGTGCACACACTCCTGGGGCCATGGACTCAGAAAACAGGGCTCCCATCCTGGTTCTTCCACGGACAGGATCTGTCACCGTGGTCAAGTCAGTATTCTGACTTTAGTTTGCTTACCTCTGGGGTGGTGCCCGCATCCTTTGGGCATCCCAGAGGTGAAAGTGTGACAAAGCCTGGCCCAGAGTAGGGACCCCTGACACATGGATGTTTTTTCTAGTGAGAGTCATGGGAACAGCAAGGGAGCTGTGGCTGTCCCATAGGGGGAGAGTTCTAAGCAGGGAAAACCTACCTGGAGGGATGAAAACACTGAGTCAGCCAGTGATGACCATGTGTCTCTGACACATGAACCCTGCAGCCTGGAGGTACCCGAGCATTCTGGTTAGCCTTCCAAACCGGTTTCTGTTCAAATAGAGCATACCATTAGTGTTTGGATTTTTAAAAATGTGAACCATGTTCATTTACATTGTTGTCTAACCTGTTCTGGTCTGTCTGCCATGCAGTAAGATCAGGGTAGCATGGGGGGAGGGTGCAGCAGCCCAGCCTGTCCTGGGGGTGGGGGGGCTTCCCAAGGGAGGGGGATGGAAAGCCAGGGGCTGCATGAGGATGCTCAGGTGGCGTAGGGGGAGGAATCTGGATGCTCGCTCATTGGAAGGTCTCACAGATGGGACACTGGTACAGGATGCCAGAGGCTGGTGGCTGACCCTGCCACACCAAAATAGGTGAACTAATTGTGATGAGAGACAGAAGGTGGCTGCCCTGAGTGAACTATGAGCCAGGGTTCTGCCTGCTTAGCCCAAAGTAACAGCAAGGTACCGGGCTGACAGTGACCAGGACACTGACTGACAGTAGCAACGCCAGGCCACGGTGTGCCTGGTTCTTGTTGCTAAGGATCTAATATACAGAATCTCAATTCACCTCCCAATCCATCATTCTGCGGATGAAGAGGCCAAGGGTGTGGGTGTGGGCTGAGAAAGGTTGTTCTGCCCTCAGCTATCTCCATGGGGACAAGAAGAGGCAGGCCTGGCCCCACACTTGGACCACGCCTTCAGAGGCATAGGGTTAGGTGACCCAGAAATCCCTGACGGTGTCCTCTGCCTGCTCCACCCCTGACCCAG
Seq C2 exon
GGCACAGCACAGCGCCTTCAGAGTCTGGGAGCGGAGAAGGAGGCAGCCCAGCAGGAGTGTGAGGCGTTTCTGTCTACCAAGCCTACGGGCTCCGCTGCCCTGCAACTGCCCGTGGTCCTCAACAGTGTGAAGAACAGATACAATGATGTGCAGAGCCTGTGCCACCTCTATGGGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-Evpl:NM_025276:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.466 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGCTGACCCACAAGG
R:
TTCTCCCCATAGAGGTGGCAC
Band lengths:
336-1499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: