GgaINT0128799 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:4555236-4556212:+
Coord C1 exon
chr18:4555236-4555393
Coord A exon
chr18:4555394-4556033
Coord C2 exon
chr18:4556034-4556212
Length
640 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCTCCCATCTGATGTGCCAGGAG
3' ss Score
3.85
Exon sequences
Seq C1 exon
TCCAGGATGACCCGCAAGCCGACCAGCTTCTGGGTAGCCTGGATCGTGTTGGCAAGGACCTGGTCCAGGTAGAGAAGGAGGTCCTGAACCGAGTGAGGTCCCCAGTGAGCTACACTGACCCCACGGACGACCTGGCCAGGAGGATCAAACAGCAGCAG
Seq A exon
GTGGGTGCTTCTGTGGGGAGGGGAGGGAAGCACTGTGGTGTTGGCCCAAAACAGAGCTGATACCTGATGTACACAGGGGACAACTTCAGCCCTTGAAGTGGGACTGGATAAGGTTGATAGAGAAATGCAGTCCCTTCCTTTAGCCCAGCTTTGTAGCCAGATGGCCCATTCATTTTGGAGCCATGCACCAGCCAGTCTTGGGGAATCCTTACTCTTGTGTGTAGTAGGGGGGAATCCTTGTACTCCTGTGAGGATGCTGTCATCGTTTACTCTCAAGTCTGTAGCATAAAAGACAACAAGATAGAGGGAATCAATCAATCAACAACAGTTTGGTGGATGTGAAGGGAATGGGAAAAGAGAGAGTGCCCTGGAGCCTCCTTCCAGTTCCCTGGTCTGTAGTAGTAGTTCGATGCGTCTTCACCCGTGGGTATTTACCCAGCCCTGGTAGATGATGGGCTTGGGTATGTTTCTTCCATCTTCCTTCCCCACGCCCTGCCATTGCCAGACAGCAGCAGTCTGGATGCCCATGAGAAGGGCCACCACACCCAGAGCCCCAAAAGCCACCCCTGAGGGAGACACGTTTTCGCAACGGCACTGTTATGACTATGCTGGGTGACTCTGCTCCCATCTGATGTGCCAG
Seq C2 exon
GAGACAACAAAGAAACTTGAGAGCCTGGGGGCAGCCAAGGATGCCTTGCAGAAGGAGTGTGAGACCTATCTTTCCAAAAAGCCCACCAGCACCTCAGCTTCCCAGCTCCCCGTCACGCTGAACGCCCTCAGGAGCAAATACAGCGACGTCAGCATGCTCTCCAGCCTGTACAACGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGACCCGCAAGCC
R:
TCTCGTTGTACAGGCTGGAGA
Band lengths:
334-974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]