GgaINT0128799 @ galGal4
Intron Retention
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4539286-4540286:+
Coord C1 exon
chr18:4539286-4539467
Coord A exon
chr18:4539468-4540107
Coord C2 exon
chr18:4540108-4540286
Length
640 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCTCCCATCTGATGTGCCAGGAG
3' ss Score
3.85
Exon sequences
Seq C1 exon
TGCTGCCCAAGAGCACCCCTGTAGTCCAGGATGACCCGCAAGCCGACCAGCTTCTGGGTAGCCTGGATCGTGTTGGCAAGGACCTGGTCCAGGTAGAGAAGGAGGTCCTGAACCGAGTGAGGTCCCCAGTGAGCTACACTGACCCCACGGACGACCTGGCCAGGAGGATCAAACAGCAGCAG
Seq A exon
GTGGGTGCTTCTGTGGGGAGGGGAGGGAAGCACTGTGGTGTTGGCCCAAAACAGAGCTGATACCTGATGTACACAGGGGACAACTTCAGCCCTTGAAGTGGGACTGGATAAGGTTGATAGAGAAATGCAGTCCCTTCCTTTAGCCCAGCTTTGTAGCCAGATGGCCCATTCATTTTGGAGCCATGCACCAGCCAGTCTTGGGGAATCCTTACTCTTGTGTGTAGTAGGGGGGAATCCTTGTACTCCTGTGAGGATGCTGTCATCGTTTACTCTCAAGTCTGTAGCATAAAAGACAACAAGATAGAGGGAATCAATCAATCAACAACAGTTTGGTGGATGTGAAGGGAATGGGAAAAGAGAGAGTGCCCTGGAGCCTCCTTCCAGTTCCCTGGTCTGTAGTAGTAGTTCGATGCGTCTTCACCCGTGGGTATTTACCCAGCCCTGGTAGATGATGGGCTTGGGTATGTTTCTTCCATCTTCCTTCCCCACGCCCTGCCATTGCCAGACAGCAGCAGTCTGGATGCCCATGAGAAGGGCCACCACACCCAGAGCCCCAAAAGCCACCCCTGAGGGAGACACGTTTTCGCAACGGCACTGTTATGACTATGCTGGGTGACTCTGCTCCCATCTGATGTGCCAG
Seq C2 exon
GAGACAACAAAGAAACTTGAGAGCCTGGGGGCAGCCAAGGATGCCTTGCAGAAGGAGTGTGAGACCTATCTTTCCAAAAAGCCCACCAGCACCTCAGCTTCCCAGCTCCCCGTCACGCTGAACGCCCTCAGGAGCAAATACAGCGACGTCAGCATGCTCTCCAGCCTGTACAACGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.721 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCACCCCTGTAGTCCAG
R:
TCTCGTTGTACAGGCTGGAGA
Band lengths:
352-992
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]