DreINT0065094 @ danRer10
Intron Retention
Gene
ENSDARG00000019808 | evpla
Description
envoplakin a [Source:ZFIN;Acc:ZDB-GENE-030829-19]
Coordinates
chr6:17973583-17974963:+
Coord C1 exon
chr6:17973583-17973755
Coord A exon
chr6:17973756-17974784
Coord C2 exon
chr6:17974785-17974963
Length
1029 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GATTGTTGTTCTCTAAACAGAAA
3' ss Score
8.54
Exon sequences
Seq C1 exon
TTCCTGCACCTAGAGCTGAGGAAAATCCCAAAGCTGCAGTGCTGGCTAACCGTCTAAACCAAATGGATAAAGATCTAGGTCAAGTTGAGATGGACACTCTGAACTGTATAAGAAGCCCACTAAACCGCACTGACCCTGCCACAGACCTTGCTAAACGTCTGCAGGAGCAAGAG
Seq A exon
GTGAGAAATTACATAGACATTTAGAAATAAAACATCTTCTACATGATTACTTATATTCCAGAATGATTTCCAGTCACTTAGATGTCCTTTTAGGTAATTAGTAACAGTAATTAAGTAATTATTTAGTGGTGTTTCACAATTATTTGATTCATTTACAAGAGTAAAGATTTTTCAATTGCACAAATTGATCACATCATTCCTAGTCTATTGAATACCAATTTACTATTACTAATTCTACTTATATTAAATATAATAATTCATATGACCAATTACACACAGGGTCGGCATGGTGGCTCAGTGGTTAGAAATAGTAGCTCACAGCAAGAAGTTCCCTGGTTCGAATCCCGCTGGGCCAGTTGGCATTTCGGTGTGGAGTTTGCTTGTTCTCCCCGTATTCACGTGGGTTTCCTCCTGGTGCTCCGGTTTCCACCTGAGTTCAAAAACATGCTGTATACGTGAATTGAAAAAACTAAATTTGCTGTAGTTCATGAATGTGTATGGGTGTTTCCCAGTATTGGGTTGCAGCTGGAAGGGCATCCGCTGCATAAAACATATGCCAGAACAGTTGGCAATTCATGGGCGACGCAGTGACGCAGTAGGTAGTGCTGTCACCTCACAGCAAGAAGGTCGCAGGTTAGACAAGAAAATTAATGAATGAATGAGTTTGCAGTTCATTCTGCTGTGGCGACCTCTGAAATACAGACTAAGCCAAAGGAAAATGAATGAATAAAATTACAAATATTACATTTACAAAGGCTACCTTCTTATCTAGTGCCCTCAGAAAGTGTCCAGTAAGTTAATTTGTGCCCGCAAATGCCCTAAAAACGGTTCAACCAGCTCTAAAACATCAAAAGACCTTGATTTGTTGGTTTGGTTTGTTTAATTGTAGTTAGACTCTGCAAGACGATTGCAAAATAGGTAGATGTTTGTACACCACTGCTCTATTTTTTTTTTCTTCTAACAAAGGCTTTTAGAGGATGAAGAACACTGTTATACTCTGCTCATTAAAGATTGTTGTTCTCTAAACAG
Seq C2 exon
AAAACAACTGCAGCACTCCAGCAGCTGGAAAAACAGAGAGTTGCAGCCCAAAAGGAAATGGAACCTTTACTTTCAAAAGACTTAAATGGGCCAACTTCTTCTACTTTACTCCAAAACCTCAGTGATGCTAAAAACAAACAGGACAGTCTAGTTGCTCTGAACAGTCTCTACAAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019808:ENSDART00000143263:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=NA C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACCTAGAGCTGAGGAA
R:
TGTAGAGACTGTTCAGAGCAACT
Band lengths:
343-1372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]