RnoINT0057009 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105107451-105108899:-
Coord C1 exon
chr10:105108727-105108899
Coord A exon
chr10:105107630-105108726
Coord C2 exon
chr10:105107451-105107629
Length
1097 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CCACTCCACCCCTGACCCAGGGC
3' ss Score
4.76
Exon sequences
Seq C1 exon
CTCCGGCAGGCTCAGCCCCGGCTGACCCACAGGCTCAGAAGCTCCTGTCACAGATGACCCAGCTGGATGGGGATCTGGGACAGGTAGAGAGGCAGGTGCTGAGCTGGGCTCGGAGCCCGTTGAACGACTCTTCTCCACTGAAGGACCTAGAGGGCCGAATCCAGAGCTGTGAG
Seq A exon
GTAAGCGAGTGGCCTTGAGGTGGCCTTGAGAGCTTCAGGACAAGAAAGGGCCCTGCCCTGGGGGTGTACACACTCCTGGGGCCATGGACTCAGAAAATAGGGCTCCCATTCTGGTTCTTCCACTGTCTTTGGTTTTCTCATCTCTGGGGTGGTACCCACATCCTTTGAGCATCCCGGGGTATGAAAGTGTGACAAAGTCTGGCCCAGAGTAGAGGCCTGACACATGGACTTTTTTCTAACAAGAGTCCTGGGTACAGCAAGGGAGCCGGGGAGTTCCCAGAGGGAAAGAGTTCTCAGTGATACAGGGAAAGGGATGGAAACACTGTCTTGTCAGCCAGTGGTGACCATGTTCTCTGTCACATGAACCCCGCAGCCTGAAGGCGCCCATGCATTCTAGTTGGCCTTCCAAACCGGTTTCTGTTCAAATATAGCATACCATTAGTGTTTGGTTTTTTGAAAAAAAATTCGAACCATGTTGATTTACATGGTTGTCTAACCTGTTCCGGTCTGTCTGCCATGCAGTGGGGGCGGGGAGGGGGGCAGTAGCCCAGCCCGGCCAGGGAGGAGAGGAGAGGAGAGGCTTCCCGAGGGCAAGGGCAGGGGATGTGAAGTCAGGTGCTGTGTGAGGATGCCAGAGGCTGATGGCTGACCCTGCCACACCAAAGTAGGTGGATTCATTGTGATGAGAGACAGAAGGCAGCCGCCCTGAGTGAATTCAGCCAGGGTTCTTCCTGCTTAGCCTGAAGCAACAGGAAGGTAGCAGGCCTGACCAGGACACTGACTGACAGTAGCAACGCCAGGTCACAGTGCGCTTGGTTCCTGTTGCTAAGGACCTAATATACAAGCTCTCATTTCACACACACACACACACACACACACACACACACACACACACACACCCAGTCCATCATTCTGCGGTCGAAGAGGCCCGGGTGTGAGTAGGGGCTGAGAGAGGCTGTCCTGCCCTAGGCTATCCACATACAGGGACAAGAAGAGACAGGCCCGGCCCCACATCTGTATCACGCCTTCGCAGGCATAGGGTTAAGTGACCCAGAAATCCCTGACTGTGTTCTCTGCCCACTCCACCCCTGACCCAG
Seq C2 exon
GGCACGGCACAGCATCTTCAGAACCTGGGAGCTGAGAAGGAGGCAGCCCAGCAGGAGTGTGAGGCGTTTCTGTCGACTAAGCCTACAGGCTCAGCGGCCCTGCAGCTGCCTGTGGTCCTCAATAATGTCAAGAACAAGTATAGTGATGTGCATAGCCTGTGCTACCTCTATGGGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=NA C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCACAGGCTCAGAAG
R:
CCCATAGAGGTAGCACAGGCT
Band lengths:
326-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]