BtaINT0058362 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56261870-56262225:+
Coord C1 exon
chr19:56261870-56262031
Coord A exon
chr19:56262032-56262117
Coord C2 exon
chr19:56262118-56262225
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
CCGCCTTGATCCTCTCCCAGCAC
3' ss Score
5.41
Exon sequences
Seq C1 exon
AAGGCGGCCTCGTGGCGAGGGCAGAGCCTGGGCAGCCTGTACACGCACCTGCAGGGCTGCACGCGCCAGCTGAACGCCCTGGCCCAGCAGCAGCAGCGCATCCTCCAGCAAGACTGGAGCGACCACCTGGCCGACCCCGCGGGCGTGCGGAGGGAGTACGAG
Seq A exon
GTCAGCGGGGGCGGGTGGGGGTGGGGTGGGGGGACAAGGCCGGCCTGGTCCTCACCGCCAGCGCCCCCGCCTTGATCCTCTCCCAG
Seq C2 exon
CACTTCAAGCAGCACGAGCTGCTGAGCCAGGAGCAGCGCGTGAACCAGCTGGAGGACGACGGGGAGCGCATGGTGGAGCTCGGGCATCCGGCCGTGGGGCCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.639
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(40.0=77.8)
A:
NA
C2:
PF0043516=Spectrin=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACACGCACCTGCAGG
R:
GTCCTCCAGCTGGTTCACG
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]