HsaINT0058513 @ hg19
Intron Retention
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:3503]
Coordinates
chr17:74017755-74018109:-
Coord C1 exon
chr17:74017948-74018109
Coord A exon
chr17:74017863-74017947
Coord C2 exon
chr17:74017755-74017862
Length
85 bp
Sequences
Splice sites
5' ss Seq
GAGGTCGGC
5' ss Score
3.97
3' ss Seq
CCCACCCGACTCGCCCCCAGCAC
3' ss Score
5.31
Exon sequences
Seq C1 exon
AAGGCGGCGTCGTGGCGCGGGCAGAGCCTGGGCAGCCTGTACACGCACCTCCAGGGCTGCACGCGGCAGCTGAGCGCCCTGGCTGAGCAGCAGCGCCGCATCCTGCAGCAGGACTGGAGCGACCTCATGGCCGACCCTGCGGGCGTGCGGCGGGAGTACGAG
Seq A exon
GTCGGCTGGCAGAGGTCGGGGCCAGGTGGGGGCGGCCAGGGCCATCCGGGTCCTCACCGCCGCTCCCCACCCGACTCGCCCCCAG
Seq C2 exon
CACTTCAAGCAGCACGAGCTGCTGAGCCAGGAGCAGAGCGTGAACCAGCTGGAGGACGACGGCGAGCGCATGGTGGAGCTGCGGCACCCCGCGGTGGGGCCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-EVPL:NM_001988:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGTACACGCACCTC
R:
CCAGCTGGTTCACGCTCTG
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)