MmuINT0059583 @ mm10
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116232630-116232986:-
Coord C1 exon
chr11:116232825-116232986
Coord A exon
chr11:116232738-116232824
Coord C2 exon
chr11:116232630-116232737
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
CTCGCTTCAATCGTCCTCAGCAC
3' ss Score
5.86
Exon sequences
Seq C1 exon
AAGGCGGCCTCGTGGCGCCGACAGAGTCTGGGCAGCCTGTACACCCACCTGCAAGGCTGCACGAAGCAGCTGAGCGCCCTGGCCGATCAACAAGGCCGCATCCTGCAGCAGGATTGGAGTGACCTCATGCCGGACCCCGCTGGCGTGAGGCGAGAGTATGAG
Seq A exon
GTCTGTGGGGACAGGCTCAGGCCCGGGCAGCGGGGGTGTCTCGGGCCATCTTCTTGCTCATGGCCGTCTCGCTTCAATCGTCCTCAG
Seq C2 exon
CACTTCAAGCAGCATGAGCTGCTGGCCCAGGAGCGGAGCATAAACCAGCTGGAAGATGACGCAGATCGCATGGTGGAGCTTGGGCACCCGGCCATTGGGCCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282:ENSMUST00000037007:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACACCCACCTGCAAGG
R:
CTGGTTTATGCTCCGCTCCTG
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types