BtaINT0058879 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40258544-40259395:-
Coord C1 exon
chr7:40259246-40259395
Coord A exon
chr7:40258690-40259245
Coord C2 exon
chr7:40258544-40258689
Length
556 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
AAGGTGCTCTCGGTTCGCAGGTG
3' ss Score
8.79
Exon sequences
Seq C1 exon
CTCTGGTGCGCCTGCAGGAGAGCGCGGACGGCTGCTGCGCGCACCCGTCGCCTTTCGTTCAGCCAGTGTGCCTGCCGAGTACCGCCGCCCGCCCCGCCGAATCCGAAGCCGCAGTCTGCGAGGTGGCCGGCTGGGGTCACCAGTTCGAGG
Seq A exon
GTAGGCAGAACGGCTGGAAGCGGGAAGGAGGCTTCTGGCCACCGGGGTAGGCAAGAGAAGCCTGTAGGTGGGCAGGTGGGGCCGATCTGGTGGGTTGTGGGGACACGCAGAGCCCCTGCCTCTGCAGTCTGCTTCTCCAACGGCTTGAAATTCACTGTCGGGGGAGTGGGGAAGTCCCCAGAACTCCTATGGCGAAGCAGGAGAGCCTCATGTTCTCTGGGTTCCCTCTGGGCACTGGGCTGCAAGGGCTATTAGAACGCTGGCCCGCGATGGAGCCGCAGGTGGGTTGGATGGGGAGCAAGGTTTTGAGCCACTGGATGGGAAGTGGGGGTGAGGTTCAGAAGCAGTCCTGTTTCTCCTGGTTCATTCACATCACAGCTCCTCTCTGCCTTCCTGACTATGAGATAGGTGTTAAAGGCAACTCATTCCCTCCTGGGCTTGCTGCGAGGGAGACAGGAGATTATAGCGGGTTTGAAAGAGCCTAGTAAAGCCAGGTCCATGTCCTGGGCATCAAGCGGACCCTGGAGGGTGTGAGGAAGGTGCTCTCGGTTCGCAG
Seq C2 exon
GTGGGGAATATTCCAGCTTCCTGCAGGAGGCTCAGGTGCCACTCATCGACCCGCAGCGCTGCTCCGCCCCCGACGTGCACGGAGCAGCCTTCACCCAGGGCATGCTCTGCGCTGGCTTCCTCGAGGGCGGCACCGACGCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGTCGCCTTTCGTTC
R:
CGCCCTCGAGGAAGCCAG
Band lengths:
238-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]