MmuINT0060097 @ mm9
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55519713-55521621:-
Coord C1 exon
chr13:55521478-55521621
Coord A exon
chr13:55519862-55521477
Coord C2 exon
chr13:55519713-55519861
Length
1616 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
TCCTCCCCTCTGATTTGCAGGGG
3' ss Score
8.44
Exon sequences
Seq C1 exon
CTCTGCTGCGCCTGCAGGAAAGCAAAACCAACAGTTGCGCGATCCTGTCACCTCACGTTCAGCCTGTGTGTCTACCCAGCGGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCACCAGTTCGAGG
Seq A exon
GTAGGCACAACTGTTGGGCGCTGGTTGGAGACTTTTGGTTATCTAGGAGCGCAGTTGGTACGCCCCGATGAATCTGGGGGACAAGTTTCACTGACATGACAGTTGTAAAAAACGCACAGAGCCCTTGTCTCTGTAGCGTGACTTTCCCAGATTCTAGAATTCTCTGTCGAGATTCCAGAGCCCCTTGAGGTTTGTTCTAGTTTTTTGCCTTCTATTGTGGCGTTAAACACCATGACCAAATCCAGCTTAGGCAGGAAAGGTTTTATTTGGCTTCCGAGGTTGCAGGGTTTCTTGCTGTCCACCATTGAGGAAGCCACAACAGGGAGTGGAGGCAGGAACTGAGGCAGGAAACGGAAAGGGACACTCCTTGCTGCCTTTCTCTTCATGGCTTGTTCAGCTTTCTTTTTAAAAAATTCACTTATTTTTATTTTATGTGCATGTGAGTCTGCCTACAAGCATATGTGTGCACCATATGTACATCTGGTACAGGGGAAGCCAGATCTGTAATACAGGTTAAAAACCACGGTGTGGGGGCTGGGAACGGAACCAAGGCCCTCTGCAAGAACAGCAAGAGCTCTTAACCTCTGAGCTAGCCCCCAACACCTTGCGGCTTGCTTACTTTGCTTTGCTTTTCTCTTTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCTCCTCCTCTTTCTCCCCCTCTTCCTCTTGTTTTGTTTTTGTTTTTTGTTTTGAAGGCAGGGTTTCTCTGTGTAGTCCCAGCTGTCCGGGAGCTGTCCAGGAGCTGTCCAGCTCTGTAGACCAGGCTGCCTTCAACCTTAAGCACTCCATCTGCCTTTGCCTCCCAAGTGCTGGGATTAAAGGCTTGCACCTTTCTGGCTCAGTTTCTTTCTTACACAATCCAGGCCCACCTGTTCAGGGCGGCATCACTCACAGTGGGCGGGGCCCTTTCACATCAACCATTAATCAAGAAAATGCCCGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGGCGCCTTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATTAATAAATAAATCTTTAAAAAAAAAAAAAAAGAAAATGCCCTACAGATATTGCCCTAGGCCAATCTTCTGGAGGCATCTCTTCGGGTGAGGTTCCTTCCCCCCCTAGATGACTCTTGAGTGCGTCAAATTGACAGACAGTAACCCAGCACAAGGATTACAGGGAGACTTGAACTGTCTTGTGCTTCTTTTGGGCTCCAAATTATAAAGGCTTAACCAGGACTTTGTCCCCATGCTGGAGCAATGGAGACAATGGAGAGAACTATTCTGGGAGCCAGGTTCTGAGCCACTGTGTGGAAGAGGATAGGAAGTGCTTCCTGTGTTTTAAGCCCTGCTCTTCTCTGGGCTTCAGTGTCCTTGCCATGAAATACTTATTGGCAGGTCCCTATCACTCAGGCTTGCTGTGAGGGAGCAAAGCGGAGTAGGTGGGGAATTGTCTGGTAGCCTGGCCCACGCAGCAAGCTCAGGTCCTCCCCTCTGATTTGCAG
Seq C2 exon
GGGCTGAAGAATACTCCACCTTCCTGCAGGAGGCACAGGTTCCCTTTATCGCCCTGGATCGCTGCTCCAACTCTAACGTGCACGGAGACGCCATTCTCCCTGGGATGCTTTGCGCTGGCTTCTTGGAGGGAGGCACCGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-F12:NM_021489:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCTGCAGGAAAGCAAAA
R:
CATCGGTGCCTCCCTCCAAG
Band lengths:
278-1894
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: