RnoINT0057474 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9742089-9744087:+
Coord C1 exon
chr17:9742089-9742229
Coord A exon
chr17:9742230-9743938
Coord C2 exon
chr17:9743939-9744087
Length
1709 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
CCCCACCCTCTGATCTGCAGGGG
3' ss Score
7.34
Exon sequences
Seq C1 exon
CTCTGCTGCGCCTGCGGGGGAGGAAAAACAGCTGCGCGATCTTGTCGCCTCATGTCCAGCCGGTGTGTCTGCCCAGCAGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCATCAGTTCGAGG
Seq A exon
GTAGGCACAAATGTTGGGGGCTGATTGGAGACTTGGTTATCTTGAGCCTGGGGGACATGTTCCACTGACATGACAGTTGTAAAAAAACAAAAAACAAAAAACCACCACCACAACAAACAACAACAAAACTCTTCTCTGTAGAGTGATTTTCCCAGAATCTAGAATTCTTTGTCTGGATTCCCTTGAGATTTGTTCTAGTTTGCCTTCTCTTCAGGCGGTCTCCCATTCAAGTACTAACCAGGCTGGACCCTGCTTAGTTTCCAACATCAGACGAGAGGCAGGAAAGGCTTTATTTGACTTCCAAGGTTGCTGTCCACCATTGGGGAAACCACAGCAGGAACTGAGGCGGGACATGGGAAGGGACACCCCTTGCTGCCTTTCTCTTCATGGCTTATTCAGCTTTCTTTTTAAAATTCATTTTTTTATCTTATGTGCATGTGTGGCTGCCTACATGTCTGTGTAAGTGCCATATGTACACCTTGTATAGGGGAAGCCAGATCTGTATATAGGTTAAAACTGCTGGGAACTGAACTCAGGTCCTCTGCAAGAACAGCAAGTGCTCTTAACCTCTGAGTTATCCCCAACACCTCGGCTGGGTTGTTTTCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCCCCTCCCCCTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCCTCCTCTTCCTCTTCCCCCTCTTCCTCTTTCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCCCCTCCTCCTCCTCCTCTTCCTCTTTCTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCATCTTCTTCCTCTTCCTCCTCCTCTTCCTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCTTTTCTTTGTTTTTGGCTTTTAAGAAACGGTTTCTCTGTGTAGTCCCAGCTGTCTAGGAGCTGTCCAGCTCTGTAGACCAGGCTGCCCTTGAAATCCACCTGCCTTTGCCTCCCAAGTGCTAGGATAAAAGGCTTGCACTTTTCTGGCTCCGCTTTCTTTCTCATACAACCAGGCCCACCTTTTGAGGGTGACTCCACCCACAGTGGGCTGGGCCCCCTCACATCAACCGTTAGTCAAGAAAATGCCTCGAAGACATTGCCCTAGGCCAATCTTCTGGAGGCATCTCCTCAGGTTGAGGGTTCCTTCCTCCCAGATGATACTGGGTCCTGTCGAATTGACAGACAGAAACCAGCACAGGATTACAGAGAGACTTGAACTTTCTTGTGCTTCTTTGGGGCTCCAAATTATAAAGGCTTAACCAGGACTTTGTCTCCATGCTGGAGCAATGGAGACAATAGGGAGAACTATTCTGGGAGCCAGGTTCTGAGACACTGTGTGGGAGAGGATAAGAGGTGCTTCCTGTGTTTTAATCCTAGCTCTTTTCTGGGCTCCAGTGTCCTTGTCATGAACTTCTTATTGGCAGGTCCCTATCCCTCGGACTTGCTGTGAGGGCGTAAAGGGTAGGTGGGGAATTGTCTGGTAGCCTAACCCACAAAGCAAACTCAGGTCCTCCCCCACCCTCTGATCTGCAG
Seq C2 exon
GGGCTGAAGAATACGCCACCTTTCTGCAGGAGGCACAGGTACCCTTCATCTCCCTGGATCGCTGCTCCAGCTCTAACGTGCACGGAGACGCCATCCTGCCTGGGATGCTTTGTGCTGGCTTCTTGGAGGGAGGCGCCGATGCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGGGAGGAAAAACAG
R:
CTCCCTCCAAGAAGCCAGCA
Band lengths:
262-1971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]