BtaINT0058882 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40261321-40261786:-
Coord C1 exon
chr7:40261716-40261786
Coord A exon
chr7:40261432-40261715
Coord C2 exon
chr7:40261321-40261431
Length
284 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
CCTCTGTGTCCATCTCTCAGACC
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTGTGCTACTACCCCCAACTTTGAGAAGGACCAACGATGGGCATACTGCCTGGAGCCCAAGAAAGTGAAAG
Seq A exon
GTGCCATACGACTTTTGGAGTGACCCAGGGCCCTCTCCCCACCCCTACCTCCTCTCCTGGGTATCATCAGACCCAAAATACATGGGATTCTGGGCCCACCTATCTCCCTCTCCCCCAGAGGGAGAAGTTCTAAGAGTGGGTAGCCTCATTTTGCAGGTGGGTAAACTAAGGCTTGGAAACTTGGAGGGCCAAAGTCAAAAGACAAGCACGTTTGGGTAGGGACTTGGCCCCTATCTGTCTGACTCAGGCTCCCTGCTCTTTCTCCCTCTGTGTCCATCTCTCAG
Seq C2 exon
ACCACTGCAGCAAACACAATCCCTGCCAGAAGGGAGGGACCTGTGTGAACATGCCGGATGGCCCACGCTGCATCTGTGCAGATCACTTCACTGGGAAGCACTGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PD(38.1=64.0)
A:
NA
C2:
PF0000822=EGF=WD(100=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCTACTACCCCCAACTT
R:
CTTTCTGGCAGTGCTTCCCAG
Band lengths:
182-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]