MmuINT0060101 @ mm9
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55523328-55523837:-
Coord C1 exon
chr13:55523767-55523837
Coord A exon
chr13:55523439-55523766
Coord C2 exon
chr13:55523328-55523438
Length
328 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCTTGTTATCTACCTCTCAGACC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTGTGCTACCACCCCCAACTTTGATGAAGATCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAGTGAAAG
Seq A exon
GTATGTATGGCATGCAGGCCCCGGGTGGCTCAAGGCTGTGTGTGTCTTGCTGCTCACTCCGTTCCCACACACCTACTCACCTACTAAGCATCATCAGATGCCAAACACTTGGGATTCTGGGCCCCGCCCTTTTCCTTCTCTTACAGCATTCTTTCAAAAGTCAGAGGAAGAATTCTGGGGAAAGAGGCCACCATTGTCCAGATGAGCTTGAGGGTCTAGAAGCTTGGGGTTCTATGGTTTGATGACAAGCAGGTGCAGGCAGGGTATTGGTCCCTACATATGTCCTTCCGACTCCGGAAGTGCTTCGCTCTTGTTATCTACCTCTCAG
Seq C2 exon
ACCATTGCAGCAAACACAACCCGTGCCACAAAGGAGGGACATGTATCAACACCCCCAATGGGCCACACTGTCTCTGCCCTGAACACCTCACTGGGAAACATTGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-F12:NM_021489:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PD(38.1=64.0)
A:
NA
C2:
PF0000822=EGF=WD(100=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCTACCACCCCCAACTT
R:
CTTTCTGGCAATGTTTCCCAGTG
Band lengths:
182-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: