RnoINT0057478 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9739741-9740389:+
Coord C1 exon
chr17:9739741-9739811
Coord A exon
chr17:9739812-9740278
Coord C2 exon
chr17:9740279-9740389
Length
467 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTCTTGAATCCTCTCTCAGACC
3' ss Score
7.94
Exon sequences
Seq C1 exon
GTGTGCTACCACCCCCAACTTTGACGAGGACCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAGTGAAAG
Seq A exon
GTATGGCATGCAGGCCCCGGGTGACTCAAGACTGTGTGTGCCCTGCTCCTCACTCCACTCGGTTCCCACACACCTTCTCGGGTGCCACACACACACTTGGGATTCCTGGCCCAGCCCCTTCCCTTCTCCTACAGAGTCCTTTCAAAAGTCAGAGGGAGAATTCTGGGGGAAGAGGCCACCCTTGTCCAGATGAGTTTAATTTAAGGTCTAGAAGCTTGGGGTGCCAGGGTTCTATGACAAGCAGGTTCAGGCAAGGCATTAGTGTCACTTGGACTCTGGGTACTTCTTTCTTTTTTTTTTTTAAACTCCCCCCCCCCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGGGTACTTCTTTCTTGAATCCTCTCTCAG
Seq C2 exon
ACCATTGCAGCAAACACAGCCCCTGCCACAAAGGAGGGACGTGTGTCAACACCCCCAACGGCCCGCACTGTCTCTGCCCTGAACACCTCACCGGGAAACATTGCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PD(38.1=64.0)
A:
NA
C2:
PF0000822=EGF=WD(100=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCTACCACCCCCAACTT
R:
CTCTCTGGCAATGTTTCCCGG
Band lengths:
182-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]