BtaINT0058883 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40261067-40261431:-
Coord C1 exon
chr7:40261321-40261431
Coord A exon
chr7:40261199-40261320
Coord C2 exon
chr7:40261067-40261198
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCTTCTCCTTTTGTCCCCAGAGA
3' ss Score
11.04
Exon sequences
Seq C1 exon
ACCACTGCAGCAAACACAATCCCTGCCAGAAGGGAGGGACCTGTGTGAACATGCCGGATGGCCCACGCTGCATCTGTGCAGATCACTTCACTGGGAAGCACTGCCAGAAAG
Seq A exon
GTGAGGAGATGCTGAGGCCAGGGATGGGGACACTGGGAAACAGGGGCAGCCTCAGACCCACTGAAGAAGTCCTGTGGATTCCCGGAGACTTGGCATGGTCCCTCTTCTCCTTTTGTCCCCAG
Seq C2 exon
AGAAGTGCTTTGAGCCCCAGTTTTTCCGGTTCTTCCATGAGAATGAAATATGGCATAGGCTTGAGCCAGCAGGTGTGGTCAAGTGCCAGTGCAAGGGTCCAAATGCCCAATGCAAGCCACTGGCCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=84.2)
A:
NA
C2:
PF0003913=fn1=WD(100=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGCAGCAAACACAATCC
R:
GCCAGTGGCTTGCATTGGG
Band lengths:
234-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]