RnoINT0057479 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9740279-9740595:+
Coord C1 exon
chr17:9740279-9740389
Coord A exon
chr17:9740390-9740463
Coord C2 exon
chr17:9740464-9740595
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTGCTTCCTTTTGTCCCCAGAGA
3' ss Score
10.69
Exon sequences
Seq C1 exon
ACCATTGCAGCAAACACAGCCCCTGCCACAAAGGAGGGACGTGTGTCAACACCCCCAACGGCCCGCACTGTCTCTGCCCTGAACACCTCACCGGGAAACATTGCCAGAGAG
Seq A exon
GTAAGAGGAACTGCCTCCCAGGAGGAAGTCCCTGGAGCTTTGGCGGGGTCCCACTTGCTTCCTTTTGTCCCCAG
Seq C2 exon
AGAAATGCTTTGAGTCTCAGCTCCTCAAGTTCTTCCATGAGAATGAGATATGGTTTAGAACTGGGCCAGGAGGTGTGGCCAGGTGCCAGTGCAAAGGTCCTCAGGCTGTTTGCAAGCTGCTGACCAGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=84.2)
A:
NA
C2:
PF0003913=fn1=WD(100=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCAGCAAACACAGCCC
R:
TCCTGGCCCAGTTCTAAACCA
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]