HsaINT0059128 @ hg19
Intron Retention
Gene
ENSG00000131187 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:3530]
Coordinates
chr5:176832055-176832434:-
Coord C1 exon
chr5:176832324-176832434
Coord A exon
chr5:176832187-176832323
Coord C2 exon
chr5:176832055-176832186
Length
137 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTATCCCTCTTTGTCCCCAGAGA
3' ss Score
10.91
Exon sequences
Seq C1 exon
ACCACTGCAGCAAACACAGCCCCTGCCAGAAAGGAGGGACCTGTGTGAACATGCCAAGCGGCCCCCACTGTCTCTGTCCACAACACCTCACTGGAAACCACTGCCAGAAAG
Seq A exon
GTGAGGAGATGTGGAGGACCTGGGCGGGGTGCTGGGGGACAGGGGCAACCCTGGGCCTACAGAATAGGTTGCTGGATACTCGGAGACTTGGCATGGTCCTAGACTCTCCTGAGACCACTATCCCTCTTTGTCCCCAG
Seq C2 exon
AGAAGTGCTTTGAGCCTCAGCTTCTCCGGTTTTTCCACAAGAATGAGATATGGTATAGAACTGAGCAAGCAGCTGTGGCCAGATGCCAGTGCAAGGGTCCTGATGCCCACTGCCAGCGGCTGGCCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131187-F12:NM_000505:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=84.2)
A:
NA
C2:
PF0003913=fn1=WD(100=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGCAGCAAACACAGC
R:
TGGCAGTGGGCATCAGGA
Band lengths:
226-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)