BtaINT0059570 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004095 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr11:105858160-105858727:+
Coord C1 exon
chr11:105858160-105858374
Coord A exon
chr11:105858375-105858464
Coord C2 exon
chr11:105858465-105858727
Length
90 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
AAGCTGCCCTGTCCACACAGGTC
3' ss Score
8.14
Exon sequences
Seq C1 exon
CTATGCCGGCTTCTACCCGCAGCTGCGCTACCGGGTGGGGGACACCTACGGGCGCACCACGGCGCAGCTGCTCACAGACCCCAGCGTGCAGAAGAGCCCCTGCTCCGTGCTGGCCCCCGTGGCCAAACCCAAGTTCATCGAGGACTTCAGCAAGCCCAAGCCACCGTTTGTGCCCTGCCGTGACCTGATTGAGCCCTACATACCCCACTACACTG
Seq A exon
GTAAGCCGCCTGCACCCCTGCACCTCGGCCCTGCCACACCCCAGGATGCCCTCCTGCCTGCTGTGGCTCAAAGCTGCCCTGTCCACACAG
Seq C2 exon
GTCTGAAGCCCTACAAGAACTTTGAGATGCTGGGCCGGTTCCCACCCCAGGAGGCGGATGCCCAGGGGTCCCTGGGGGGTGAGAATGTATCCAGGCAAGTCCCACTGCCTGCAGGCTTCATGCCCTATCCCCCTTACGCCCCCTGCCCTCCGGGCAGGAAGGGGGACTCCAGGGACCTTGGACACCCGGGGCTGCGGCTGGCATTAGGGGAAGAGGCCTGGAAGAGCACCGCCCCTGCCTGCGAGGCTCCCGGGCAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004095:ENSBTAT00000005347:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(89.6=82.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACCTGATTGAGCCCTAC
R:
CGTAAGGGGGATAGGGCATGA
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development