HsaINT1013054 @ hg38
Intron Retention
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166 member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr9:137245307-137245853:-
Coord C1 exon
chr9:137245639-137245853
Coord A exon
chr9:137245558-137245638
Coord C2 exon
chr9:137245307-137245557
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
AGGCTGCCCTGTTGGTACAGGTC
3' ss Score
5.88
Exon sequences
Seq C1 exon
CTATGCCGGCTTCTTTCCGCAGCTGCGCTACCAGGTGGGGAACACCTATGGGCGTACCACGGGGCAGCTGCTCACAGACCCCAGTGTGCAGAAGAGCCCCTGCTCTGTGCTGTCCCCCATGTCCAAACCCAAGTTCATTGAGGACTTCAGCCAGTCCAAGCCCCCGAGGGTTCCCTGCCAAGACCTGACGGAGCCCTACATCCCCCACTACACCA
Seq A exon
GTGAGCTGCCAGTCCCCAGCCCTGCACCCTCCTGTGCCCGCCTGCCTGTCCCGGCACTCACAGGCTGCCCTGTTGGTACAG
Seq C2 exon
GTCTGAAGCCCTCTAAGAACTTTGAGATTCTGGGCCAGCTCCCACCCTTGGAGGTGGACGCCCAGGAGCCGCCAGGGGTAGAGAACATACCCAGACAGATTCTGCTGCCTGCAGGCTTCACGCCCGACACCCCGCACCCTCCGTGCCCACCAGGCAGGAAGGGAGACTCCAGAGACTTGGGACACCCAGTATACGGGGAAGAGGCCTGGAAGAGCGCCACTCCTGTTTGCGAGGCCCCCAGGCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163:ENST00000344774:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=NA C2=0.664
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(89.6=82.2)
A:
NA
C2:
PF106294=DUF2475=PD(89.6=32.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCCAGTGTGCAGAAGAG
R:
GCTGGCCCAGAATCTCAAAGT
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains