GgaINT0124769 @ galGal3
Intron Retention
Gene
ENSGALG00000008596 | FAM166A
Description
NA
Coordinates
chr17:2271154-2273273:+
Coord C1 exon
chr17:2271154-2271347
Coord A exon
chr17:2271348-2273053
Coord C2 exon
chr17:2273054-2273273
Length
1706 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCCTGCTGCTTCCCTGCAGGGT
3' ss Score
11.24
Exon sequences
Seq C1 exon
CTATGAGGGCTTCCTCCCTCAGTACAACTACCAGTTTGGAGAGACCTATGGCAAAACCACGTACCGCCTGCTGACGGACCCACACATCCGGAGGAGCCCTCGCTCTGTGCTGGCACCGCTGTGCAAGCCGAGGTTCATTGAGGACTTCAGCGGGACACAGCACGGCCTGCAGCCCTTCCTCCCTGCACACCCAG
Seq A exon
GTGAGCAGAGCCCAGAGTTGTGTGGGTTTGGTCACCAGTGAGGTCTGTGCCACCCGCAGTGGGCTCCTGGGGGCTGTTGTTGGTACAGCTCCACATCGTGTGGGAGCTCAGAGCTCAGGGCAAAGCCTCAGCCAGTGAGTGCATGTTGGCACCTGGTGGGGTGCAAAGTTAGACCCCAGGTTGTCTTTGCTGGGATGGAGATAAATGGCCTCAAGTTGCTCCAAGGGAGGTTCAGGTTGGGTATTAGGAAGCATTTATTCTTCAAAAGAGTGATAATGCATTGGCACAGCTGCCCAGGGAGTGGTGGATTCACCATCCCTGGAGGTGTTCAAGAACTCTGGAGATGTGGCACTGAGGGACCCTTTACCTGCTGGCAATTTGTGTCTCGTAGCTTCCTGCAAACTTATGCTCCTCCCAGCCGTGTTCTGCAGGACTGGGACTCCACCAGGCAGTGTTGTTCCCAGGCTTTGTTCCTGGACGTTTCCATTTGCATTTCCTTGGACTGAGTGGTTTGAAGGGACCAAACGAACCAGTCGACCTGGTTGATGTCTGTCATTAGTCTTTGCCATTGTTCTCATCCCTCCCAACCCCACCACTGTCTGCAGCTGGGAGCTCAGCCTCCTGCTCGCTGGTGGCGTGCTGGGAACACAGCCACGAGAAGCACCGCATGCCTCCGTTCCTCAAACCTCCACTGCAAGCTTTGCTCAGCACTGCCTGCCTTCCTTAGGCACAACGTTACGCACAGCTGTGGTCAGAGAGCCCCCAGCAGTGCTGCAAACGTGGCCTCCAGCAAGCTCAGCACCCAAAGGGTTGGCATCTTCGGTAAAGCCTTGTTGGTGGGAACAAAGGACGTTGTTGGTTCCCACCCATTGAGTCCCGTGTTGAGTTTTTCCTGGAATGCTGTTGGGGATGTGGTTGTGCCGGGGCTCAGGGTGGCCATGCAGGCACTGCTGAAGGGATATGGATATGGATAGGGATATGGATGTGGCACAGGCTGGTCAGGAGTTGCTTGGAGGCTCCTTGTGTACAAAGGGGTTTCATTTTTGGCAACCCTGCCCACGGCAGAGGGTTGGAACTGGATGATCTTTGAGGTCTCTTCCAACCCAAGCTGTTCTGAGACTCATTTTCCTGTCAGTGCAATAACTGGTTTGCCAGCTGAAGAAGAAAAGCAGAGATGCAGTACTTCCAATAGAAATGCAGGAAACATGAAGGTTATCTCGCTTGAAAACTGGCACGTTGGGTTGGAAAATCAGTTTAATCAAGGATTCTGTTATCCTGGACAGCAGCTGATAGTGCCGTTGTACAGAGTTCATGTACCCTATAACGTTATGTACGACATGTGTCATTTATCACATCACTGTGGGCAGATTACAAACCTAAATGCCAGCCGACAGCCCCATACCTGTGCAGAAGGGCAAATCCTGTGGGCAGTGCTGGTAGCAGCGCGGATGCCGTGGAAAAGGCGGTGGTGGCTGCGGGCTGAAAGGAATGACTTGGAGAACAGAAATGGGAAGGGTTTGGTTTGTTTAAAAACAAAGGAATGAATGGGACGCAGTGAGTTCTCCCATGAGGAAGAGCTGCTGTTCTCCATGAGCGCCTGGCGCTGAGTGCTCTGGGTCTGCGCTCCCGTCCCAGGGAGCAGGAGGGGGCTGAGGGCACAGTGCTGGCCGTGCCACGTCCCATCCCGTCCTGCTGCTTCCCTGCAG
Seq C2 exon
GGTTCTTCCCCTATGACAGAGCCGGAGCTCTGACCAACTTCCCTGAAGCGGAGTTTGGGCCGAAGCCGCCCGCACCGGGGCCGGCAGAGCCCAATCTGACGCACACGGAGCCCCAGCATGGCCACGGCGGCTCAGGGCTGAGTGGGTGCCCACCCAGTGCGGCCTGGGACCCATCGGGGCCACCGCAGGGACAGGAGTGGCGGCTGCCCCCAATCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008596:ENSGALT00000013998:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.836
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PD(88.9=84.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGACCTATGGCAAAACCA
R:
ACTCCTGTCCCTGCGGTG
Band lengths:
355-2061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]